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...tgctattcttagatttgaacgtaagatccttaatattgaacatcacatttgtggttgtatacttgtatcacgtacctgatatgtaatggtctgattttagGATTTGAGCTTTACTTTGGTTAAAAAAACTTCATCAGGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCAC
species | Oryza sativa |
transcript | LOC_Os03g31550.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GATTTGAGCTTTACTTTGGTTNNNNNNNCTTCATCAGGCATTTTGCAATCAEST: gi|88432584|gb|CI567623.1|CI567623
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... ctgattttagGATTTGAGCTTTACTTTGGTTAAAAAAACTTCATCAGGCATTTTGCAATCA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GATTTGAGCTTTACTTTGGTTEST: gi|88401614|gb|CI588555.1|CI588555
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... ctgattttagGATTTGAGCTTTACTTTGGTT
EST: CTTGCACTGTGATGGTCTCATGCTATGATCAAACTACACAAGAAGACACA GATTTTGAGCTTTACTT
genomic: CCTGCACTGTGATGGTCTCATGCTATGATCAAACTACA-AAGAAGACACAgtgagaacta ... ctgattttagGATTT-GAGCTTTACTT
catttgtggttgtatacttgtatcacgtacctgatatgtaatggtctgattttagGATTTGAGCTTTACTTTGGTTAAAAAAACTTCATCAGGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCAC
gtctgat putative branch site (score: 8)
atatgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctattcttagatttgaacgtaagatccttaatattgaacatcacatttgtggttgtatacttgtatcacgtacctgatatgtaatggtctgattttagGATTTGAGCTTTACTTTGGTTAAAAAAACTTCATCAGGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
tgctatt
- - - - - - - - - - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - - - - - - - - - - - gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atatgta