1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...gaacatcacatttgtggttgtatacttgtatcacgtacctgatatgtaatggtctgattttaggatttgagctttactttggttaaaaaaacttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCACAGTAGAGGGAATTGGGAATCGTCAGCGAGGTTTGCAC
species | Oryza sativa |
transcript | LOC_Os03g31550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88366478|gb|CI610623.1|CI610623
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88364694|gb|CI612509.1|CI612509
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: CCTGCACTTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGGTTTATTCTTGTGGAAGGAAEST: gi|88404507|gb|CI580943.1|CI580943
genomic: CCTGCACT-GTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCT-GTGGAAGGAA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAACTCAACGCATGCCTTGGCTCGGCTTTATTCTGTGGAAGGAEST: gi|88299845|gb|CI577347.1|CI577347
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAA-TCAACGCATGC-TTGGCTCCGCTTTATTCTGTGGAAGGA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGEST: gi|88367173|gb|CI563937.1|CI563937
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCG
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88314018|gb|CI600020.1|CI600020
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGGACTGTGATGGTCTCATGCTATGATCAAAATACAAAGAAGACACA GCATTTTGCAATCAAGGCATGGTTGGCTCCGCTTTATTCTGTGGAAGGEST: gi|88368103|gb|CI574985.1|CI574985
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGG
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88728262|gb|CI751772.1|CI751772
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAACCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88421291|gb|CI569136.1|CI569136
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88410918|gb|CI578724.1|CI578724
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGGACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGAAACA GCATTTTGCAATCAACGCATGCTTGGGTCCGEST: gi|88430101|gb|CI565114.1|CI565114
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCG
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88692572|gb|CI736147.1|CI736147
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GNATTTGGCAATCAACGCAEST: gi|88694482|gb|CI738520.1|CI738520
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAAEST: gi|88353883|gb|CI634674.1|CI634674
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAEST: gi|88423734|gb|CI617086.1|CI617086
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGC-ATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GGATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88395413|gb|CI611330.1|CI611330
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGTTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88350340|gb|CI623278.1|CI623278
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTAAAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCCTTTATTCTGTGGAAGGAAEST: gi|88398129|gb|CI585632.1|CI585632
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGC-TTTATTCTGTGGAAGGAA
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88411227|gb|CI564348.1|CI564348
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATEST: gi|88391562|gb|CI600751.1|CI600751
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAAT
EST: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACA GCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAG
genomic: GCCTGCACTGTGATGGTCTCATGCTATGATCAAACTACAAAGAAGACACAgtgagaacta ... acttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAG
gtaatggtctgattttaggatttgagctttactttggttaaaaaaacttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCACAGTAGAGGGAATTGGGAATCGTCAGCGAGGTTTGCAC
gtctgat putative branch site (score: 43)
cttcatc putative PPT
ttaaaaaaacttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacatcacatttgtggttgtatacttgtatcacgtacctgatatgtaatggtctgattttaggatttgagctttactttggttaaaaaaacttcatcagGCATTTTGCAATCAACGCATGCTTGGCTCCGCTTTATTCTGTGGAAGGAATGCACATAATCACAGTAGAGGGAATTGGGAATCGTCAGCGAGGTTTGCAC
-aacatca
- - - - - - -gtggttg
- - - - - - - - - - - - cttgtat
- - - - - - - - - - - - - - - - - gtacctg
- - - - - - - - - - - - - - - - - - - - -atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - tctgatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taaaaaa