1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gaaccaagctccacatttgaatatcaatgttaacacggtgcttaatgctttggttatattaatgattttctgccaatctaattattgcttattgtttcagCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACT
species | Oryza sativa |
transcript | LOC_Os03g26080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAG CTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTC
genomic: ATCCACACAAAACCATTGGAATAATTGAACTTGGGGGCGCCTCAGCACAGgttctctgat ... attgtttcagCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTC
tgctttggttatattaatgattttctgccaatctaattattgcttattgtttcagCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACT
ttgtttc CT-rich tract
ttatattaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaccaagctccacatttgaatatcaatgttaacacggtgcttaatgctttggttatattaatgattttctgccaatctaattattgcttattgtttcagCTGACATTTGTTTCTGATGAAGTACTTCCTCCGGAACTGTCAAGAAATTTCACTTTTGGTGGAACAACATATACTCTCTATAGCAACAGCTTTCTAAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
gaaccaa
- - - -gctccac
- - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - tgcttaa
- - - - - - - - - - - - - - - - - - - - - - -tgctttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tattgct