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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacactacacaccacctagctccttcttctccaattcgatcgatcgcccgaactaacttgagcttgcagGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG

Basic information

species Oryza sativa
transcript LOC_Os03g24930.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24930.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AC234171.1_FGT001 (Zea mays), 3'ss of exon 2
------------------------------------------------gtacactacacaccacctagctccttcttctccaattcgatcgatcgcccgaac-taacttgagcttgcagGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG
                                                | | | | ||  |||| |  | || | |   |       || |        | | || ||      ||||||| ||||| |||||||||||||||||||||||||| |||||||| || |||||   ||| || |||||||||||||| ||||||||||| ||||||||||
gtgggttgattcattgatcgggtgcacctgcgctctgactgaatgactgaaaaatccattccacttc-caccatttatgcatggcaaattggcaatggcatcatatctccccgctgcagGACTTCACTGCGAAGCTGTCGGACTTCGGGCTGGCCAAGATGGGCCCCGAGGGCGAGGACACGCACGTGACGACGCGCGTGATGGGCACCCACGGGTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88409616|gb|CI568906.1|CI568906
EST:     CCCCCGTCATCTACCGCGACTT-AAGGCCTCCAACATC-TCCTC-ACTCG                         GAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGC-GGAG
genomic: CCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGgtacactaca ... gagcttgcagGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAG
EST: gi|55827813|gb|AU057426.2|AU057426
EST:     CCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCG                         GAGTTCACGGCGAA-CTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAG
genomic: CCCCCGTCATCTACCGCGACTTCAAGGCCTCCAACATCCTCCTCGACTCGgtacactaca ... gagcttgcagGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctagctccttcttctccaattcgatcgatcgcccgaactaacttgagcttgcagGAGTTCACGGCGAAGCTGTCGGACTTCGGGCTGGCGAAGATGGGGCCGGAGGGTTCGGAGACTCACGTGACGACGCGGGTGATGGGCACGCACGGGTACG
                                    aactaac  putative branch site (score: 1)