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...atgcatagaatattatttgccagattttgctgaattcattagcaacgatgtagagaagtggtaattgaaaagcccaactaatccgtggttgtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAGGTCTATGGAGGATCCCTGGACAATGTGAAAGGATGCACTGATCAGGTG
species | Oryza sativa |
transcript | LOC_Os03g21460.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: NGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCNACC-ACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33687222|gb|CF315461.1|CF315461
genomic: CGGAGGTCGGCGTCCGCATCGACTGCGTACTCACC-ACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33687113|gb|CF315352.1|CF315352
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|58601647|gb|CK012175.1|CK012175
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTEST: gi|88308036|gb|CI647863.1|CI647863
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGT
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33808256|gb|CF330017.1|CF330017
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTTACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33654738|gb|CF277352.1|CF277352
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|58593206|gb|CF991514.1|CF991514
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|218495156|gb|FG966275.1|FG966275
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|88396730|gb|CI620063.1|CI620063
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|66913473|gb|CX100321.1|CX100321
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33659109|gb|CF281722.1|CF281722
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|88762168|gb|CI771724.1|CI771724
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: AGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAEST: gi|33661942|gb|CF292909.1|CF292909
genomic: AGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
EST: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTG GGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
genomic: GCGGAGGTCGGCGTCCGCATCGACTGCGTACTCACCACCCACCATCACTGgtgagcgtcc ... gtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAA
cgatgtagagaagtggtaattgaaaagcccaactaatccgtggttgtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAGGTCTATGGAGGATCCCTGGACAATGTGAAAGGATGCACTGATCAGGTG
aactaat putative branch site (score: 39)
taattgaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcatagaatattatttgccagattttgctgaattcattagcaacgatgtagagaagtggtaattgaaaagcccaactaatccgtggttgtggttgtagGGATCATGCTGGTGGCAATGAAAAGATGGCGCAGTCAGTGCCAGGGATTAAGGTCTATGGAGGATCCCTGGACAATGTGAAAGGATGCACTGATCAGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
atgcata
- - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactaa