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gtaagtgctctactgctctgttctataactctgcatgtttccaactacaaggtttacgtttacccactgctacccgactgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT
species | Oryza sativa |
transcript | LOC_Os03g21230.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATTAAGGGAGTTCTAGCTGCTGACATAAGGCAEST: gi|88400569|gb|CI595990.1|CI595990
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|88431457|gb|CI579574.1|CI579574
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|29672175|gb|CB668450.1|CB668450
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|88407222|gb|CI581309.1|CI581309
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|117246958|gb|CT843762.1|CT843762
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|29674514|gb|CB670789.1|CB670789
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|88452866|gb|CI574413.1|CI574413
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|88430841|gb|CI571831.1|CI571831
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAEST: gi|58655495|gb|CK044175.1|CK044175
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
EST: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCAT TAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
genomic: GATTCGCCATGGGATGGAGTGGTATGCAGCAACAACAGAGTGATCTCCATgtaagtgctc ... actgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCA
tgcatgtttccaactacaaggtttacgtttacccactgctacccgactgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT
ctgtttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctctactgctctgttctataactctgcatgtttccaactacaaggtttacgtttacccactgctacccgactgtttcagTAAAATTTCTACCATGGGCATCAAGGGAGTTCTAGCTGCTGACATAGGGCAACTGACCGAGCTTCAATCCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT