1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...accctatccctgcatgctctttgccttaggttgctaaaagttttaggcactttatatcttgtgaattagcatgtttgagctaaatactctgtttttgcagAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCATGATGATCTATCTCAGCGAGCGAAA
species | Oryza sativa |
transcript | LOC_Os03g21080.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGATAG AAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCAEST: gi|88353877|gb|CI634668.1|CI634668
genomic: TGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGATAGgtatgttggc ... gtttttgcagAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCA
EST: TGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGATAG AAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCA
genomic: TGTGACCATGATCTTTTTGTTGAGATGCCTGGTCGTGACCCCTCTGATAGgtatgttggc ... gtttttgcagAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCA
ggcactttatatcttgtgaattagcatgtttgagctaaatactctgtttttgcagAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCATGATGATCTATCTCAGCGAGCGAAA
agctaaa putative branch site (score: 17)
ctctgttttt putative PPT
tttatatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accctatccctgcatgctctttgccttaggttgctaaaagttttaggcactttatatcttgtgaattagcatgtttgagctaaatactctgtttttgcagAAATTATCTCTCGTCAGTACTTATTCAAGAGATTTTTCTCACCCTTGACCATGATGATCTATCTCAGCGAGCGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - tgcatgc
- - - - - - - - - ctttgcc
- - - - - - - - - - - - - - ggttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttgtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agctaaa