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...caagagtcgtacttcgtctggactgaatgtgtgctgcaccattattttgcttgaaatgtaccacttattggaatttctgtttctttatctttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAGGATCAAGTGATGTTATTGGAGGAGGGTGTCCAAGCACCAGTGCAAAAG
species | Oryza sativa |
transcript | LOC_Os03g19970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|88851822|gb|CI679380.1|CI679380
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|58664540|gb|CK053226.1|CK053226
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|88294772|gb|CI604644.1|CI604644
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|88294772|gb|CI604644.1|CI604644
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|88369930|gb|CI680610.1|CI680610
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|88590210|gb|CI709044.1|CI709044
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|58674145|gb|CK062831.1|CK062831
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|58674145|gb|CK062831.1|CK062831
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|58674145|gb|CK062831.1|CK062831
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|58674145|gb|CK062831.1|CK062831
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC TEST: gi|88330229|gb|CI658538.1|CI658538
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtag-
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAEST: gi|88310897|gb|CI659500.1|CI659500
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
EST: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGC ACACTCGGATGTAAATTCAGCACTAATGGATTCTAGCTCAAACAAAGGAGA
genomic: GCATATGCGGAGGTTCTCTATTATAGGAAGAATGCTGCTTCTATTAAAGCgtaagtaatt ... ttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGA
tttgcttgaaatgtaccacttattggaatttctgtttctttatctttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAGGATCAAGTGATGTTATTGGAGGAGGGTGTCCAAGCACCAGTGCAAAAG
tttctgtttctttatc CT-rich tract
tttctttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagagtcgtacttcgtctggactgaatgtgtgctgcaccattattttgcttgaaatgtaccacttattggaatttctgtttctttatctttgttagtagACACTCGGATGTAAATTTAGCAGTAATGGATTCTAGCTCAAACAAAGGAGAGGATCAAGTGATGTTATTGGAGGAGGGTGTCCAAGCACCAGTGCAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - ctgaatg
- - - - - - - - - - - - - - - -tgctgca
- - - - - - - - - - - - - - - - - - - - - - - ttgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtaccac