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...tcttcgaatgcttttgagctggaaattctagaatctggaatttcatgcatgccaaatgctaaggccaccttcaattttttttattgttttttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCGCCTTTATGAGGTTATATACACTCCTACGGATATATATGTTGTGATGGA
species | Oryza sativa |
transcript | LOC_Os03g17980.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCEST: gi|58679972|gb|CK068659.1|CK068659
genomic: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCEST: gi|33797130|gb|CF324430.1|CF324430
genomic: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCEST: gi|33678911|gb|CF307150.1|CF307150
genomic: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCEST: gi|88250467|gb|CI348697.1|CI348697
genomic: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
EST: AAAGATCCTGAACCCCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCEST: gi|29614995|gb|CB620008.1|CB620008
genomic: AAAGATCCTGAACCGCCGCCAAATGAGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
EST: AGAAATATGGAAATGGAGGAGAAAG CAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
genomic: AGAAATATGGAAATGGAGGAGAAAGgtaacctcct ... ttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTC
tgcatgccaaatgctaaggccaccttcaattttttttattgttttttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCGCCTTTATGAGGTTATATACACTCCTACGGATATATATGTTGTGATGGA
ttttttttattgtttt CT-rich tract
ttcaattttttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttcgaatgcttttgagctggaaattctagaatctggaatttcatgcatgccaaatgctaaggccaccttcaattttttttattgttttttgtttacagCAAAGAGAGAAATCAAGATACTGAGATTGTTCATTCATCCCCATATCATTCGCCTTTATGAGGTTATATACACTCCTACGGATATATATGTTGTGATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - -gaatgct
- - - - - - - - agctgga
- - - - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - caaatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caccttc