1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggggcttctcaccggcatcatcaaaattcggcaccttgctgctccggttggcgagccctgacagcgatggcgtttcttcttgtttggtgaaattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCGTTCGACCTGCTCGCGACTGTGGCCGGAAAGCTGCTTGATGAGGGGGAGG
species | Oryza sativa |
transcript | LOC_Os03g16700.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTTCCCAAGTCCGCGAGG GGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCGEST: gi|88330100|gb|CI652493.1|CI652493
genomic: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTCCCCAAGTCCGCGAGGgtatggggct ... aattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCG
EST: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTCCCCAAGTCCGCGAGG GGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCGEST: gi|88330829|gb|CI636841.1|CI636841
genomic: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTCCCCAAGTCCGCGAGGgtatggggct ... aattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCG
EST: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTCCCCAAGTCCGCGAGG GGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCG
genomic: GAGGCGGAAGCCACGTCGCGGAGATGCCGCGCGTCCCCAAGTCCGCGAGGgtatggggct ... aattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCG
ggttggcgagccctgacagcgatggcgtttcttcttgtttggtgaaattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCGTTCGACCTGCTCGCGACTGTGGCCGGAAAGCTGCTTGATGAGGGGGAGG
ccctgac putative branch site (score: 3)
tgaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggggcttctcaccggcatcatcaaaattcggcaccttgctgctccggttggcgagccctgacagcgatggcgtttcttcttgtttggtgaaattgtgcagGGCAAGAGATCAATTCGGAAGAAGGAGAGCCAGGGTCAGGTGATGTGCGCGTTCGACCTGCTCGCGACTGTGGCCGGAAAGCTGCTTGATGAGGGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT