1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacaattttaatgcaacatcttttcctttcagtattttttttggtcaactgaggtgatcatatttatatttcatgtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGA
species | Oryza sativa |
transcript | LOC_Os03g16110.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATAEST: gi|487319|gb|D30003.1|D30003
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATAEST: gi|300216266|gb|HO088051.1|HO088051
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATAEST: gi|87019837|gb|CI299235.1|CI299235
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATAEST: gi|58587689|gb|CF985997.1|CF985997
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATAEST: gi|7219932|gb|AU062542.2|AU062542
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
EST: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAG GTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
genomic: CAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGgtacaatttt ... gtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATA
cagtattttttttggtcaactgaggtgatcatatttatatttcatgtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGA
atcatatttatatttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaattttaatgcaacatcttttcctttcagtattttttttggtcaactgaggtgatcatatttatatttcatgtgatgtcagGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC