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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagctaacgaaatcaaacagtaggaagaagaaatggggaatatttgattttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgataggtggatgggtcgggttcttttcctatgatacagTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGT

Basic information

species Oryza sativa
transcript LOC_Os03g15780.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g15780.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G161337_T02 (Zea mays), 3'ss of exon 2
gtgagctaacgaaatcaaacagtaggaagaagaaatggggaatatttgattttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgataggtggatgggtcgggttcttttcctatgatacagTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGT
    |  | |    || |    |  |||| |||      ||| ||||||| |||  | | |||  |||||||   |  | |||||| | | ||||  |||||||||||||||| |||||||||||||||||||| ||  | |||||||| ||||||||||| || |||||| ||||||| |||||||||||||||||||||||                                 
----gtgagcagcctcgattgctgagaaggaga------gaagatttgatgttgccgatgatgttatgtgaatagtcacttttggtct-tctgttcttgatagGTGGATGGGTTGGGTTCTTTTCCTATGATACGGTTAGGTATGTTGAGAAGAAGAAGCTACCGTTCTCCAGTGCTCCTCAGGACGATAGGAACCTTCCTGA---------------------------------

upper sequence: LOC_Os03g15780.2 (Oryza sativa), 3'ss of exon 2
lower sequence: AT2G29690.1 (Arabidopsis thaliana), 3'ss of exon 3
gtgagctaacgaaatcaaacagtaggaagaagaaatggggaatatttgattttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgat-aggtggatgggtcgggttcttttcctatgatacagTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGT
||||| |   ||||||      ||   |||        |  || |||| ||||     |  |||  |||       |    ||| |||     ||||| |  |||||| ||||| || | |||||| ||||| || || ||||||||||| |||||||||||||| || ||   ||||||  |||| |||||||  ||||||||                                 
gtgag-tggagaaatctgtttttaaataga--------gtgatgtttg-ttttagcattgctgatttgt----ttggatggttgattt---gatttgtaaccagGTGGTTGGGTTGGATACTTTTCATATGACACTGTACGTTATGTTGAGAAGAAGAAGCTGCCTTTTTCTAATGCTCCAGAGGATGATAGGAGTCTTCCTGA---------------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtttctttgtttgtgataggtggatgggtcgggttcttttcctatgatacagTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGATGTTCACCTTGGGCTTTATGATGATGTTCTCGT
                                    ttcttttcctat  CT-rich tract
        tttgttt  TA-rich tract