1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagctaacgaaatcaaacagtaggaagaagaaatggggaatatttgattttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGA
species | Oryza sativa |
transcript | LOC_Os03g15780.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCG GTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGAEST: gi|88360057|gb|CI610171.1|CI610171
genomic: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCGgtgagctaac ... tttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGA
EST: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCG GTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGAEST: gi|88394676|gb|CI622550.1|CI622550
genomic: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCGgtgagctaac ... tttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGA
EST: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCG GTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGA
genomic: GGAAGGATGGCACCCGCAGCAGATCGATCAGCTCCCCGATTCCTTCACCGgtgagctaac ... tttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGA
attttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGA
atttgat putative branch site (score: 5)
tttctttgttt putative PPT
ttatgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctaacgaaatcaaacagtaggaagaagaaatggggaatatttgattttgttggttatgaaatgtgaaccatggcatttggtttctttgtttgtgatagGTGGATGGGTCGGGTTCTTTTCCTATGATACAGTCCGTTATGTTGAAAAGAAGAAGCTGCCCTTCTCCGGTGCTCCCCAGGACGATAGGAACCTTCCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC