1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggatagttatgctatctttaagtccagctatctggacatggtcgaatctgttggaagaatctaacacaaaatattttaattatctttccttccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG
species | Oryza sativa |
transcript | LOC_Os03g15700.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCG TTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACAEST: gi|58676654|gb|CK065341.1|CK065341
genomic: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCGgtgagtaaaa ... tccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACA
EST: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCG TTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACAEST: gi|14191724|gb|AU183935.1|AU183935
genomic: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCGgtgagtaaaa ... tccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACA
EST: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCG TTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACA
genomic: GCCCGCGCAGCCCCAGCCCAACAAGAGAAAGTTCGCGCCCCGCAAGTCCGgtgagtaaaa ... tccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACA
atctgttggaagaatctaacacaaaatattttaattatctttccttccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG
tattttaattatcttt CT-rich tract
aatctaacacaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatagttatgctatctttaagtccagctatctggacatggtcgaatctgttggaagaatctaacacaaaatattttaattatctttccttccttttcagTTAAGATTGGAAGACCTGGGTATCAGGTGACTAAGCAGTATGATCCTGACATGAAGCAACACTCATTTCTTTTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - ttatgct
- - - - - - - - - - - tccagct
- - - - - - - - - - - - - - - - -ggacatg
- - - - - - - - - - - - - - - - - - - - - - - -ctgttgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaaaa