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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagatactgcatttcttgtatacaattgtgacttctgttcaaagtttatttggggacatcctataatacaatgtgcgaatttcagGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT

Basic information

species Oryza sativa
transcript LOC_Os03g15690.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g15690.2 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G118208_T01 (Zea mays), 3'ss of exon 2
gtatagatactgcatttcttgtatacaattgtgacttctgttcaaagtttatttgggg--aca-tcctataatacaatgtgcgaatttcagGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT
||| ||||||||||| ||||||||  |  ||||  |  ||||||| |||| |  || |  ||| || | ||| ||   |||| |||||||||||||| ||||| ||||||||||| ||||| ||||||||||| |
gtacagatactgcatgtcttgtatg-atctgtg-ttattgttcaaggtttttggggagcaacaatcttttaacactgggtgcaaatttcagGCTTTACAAAGGTCTACTTCCTCTTTGGGGCCGCCAAGTTCCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58682611|gb|CK071298.1|CK071298
EST:     TGCCTGACGGATGGGTTTCCGAAGATTGTCCAATCTGAAGGTGCCTTTGG                         GCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT
genomic: TGCCTGACGGATGGGTTTCCGAAGATTGTCCAATCTGAAGGTGCCTTTGGgtatagatac ... cgaatttcagGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttctgttcaaagtttatttggggacatcctataatacaatgtgcgaatttcagGCTTTATAAAGGACTACTTCCTCTCTGGGGTCGCCAAGTTCCTT
       ttcaaagtttattt  TA-rich tract