1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtttgtctcttgaaaaatccattatttctgtgctgacagctggcttctgtcaaaaacaggattatgcaaatgcaatcctgctaacctcttgcagaatatgattgttatgttacattacaccataatgttaactgacataaaattttgattatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAG
species | Oryza sativa |
transcript | LOC_Os03g14990.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCAGAATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAG ACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGEST: gi|33674921|gb|CF303160.1|CF303160
genomic: CCCAGAATCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGgtttgtctct ... attatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTG
EST: AGCAGATATGCAAGTAGAACTCGACCGGAG ACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGEST: gi|218496154|gb|FG946668.1|FG946668
genomic: AGCAGATATGCAAGTAGAACTCGACCGGAGgtttgtctct ... attatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTG
EST: TCCCAATTACAGAAGCAGATATGCAAGTAGAACTCGACCGGAG ACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTG
genomic: TCCCACTTACTGAAGCAGATATGCAAGTAGAACTCGACCGGAGgtttgtctct ... attatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTG
tgttatgttacattacaccataatgttaactgacataaaattttgattatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAG
acataaaattttgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtctcttgaaaaatccattatttctgtgctgacagctggcttctgtcaaaaacaggattatgcaaatgcaatcctgctaacctcttgcagaatatgattgttatgttacattacaccataatgttaactgacataaaattttgattatcacagACGGCCAGGCCAGAGCAGAATAACCACCCCAAGAAAGGAGACTGACACTTGCAAAATTCTTTCAGGGACACATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA