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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgccaccgtccgacccgatcgatccgcgcggccttcgttgtgtgcgatttagggttctgggctccggatctgactgttttttttttcgggggcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA

Basic information

species Oryza sativa
transcript LOC_Os03g13970.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G165926_T01 (Zea mays), 3'ss of exon 2
-------gtacgccaccgtccgacccgatcgatccgcgcggccttcgttgtgtgcgatttagggttct--gggctccggatctgactgttttttttttcgggggcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA
          | ||| |  |||| || ||||||| |  |   |   |||   || ||  |||||||    ||  ||||||||||| || || |  ||   |||     ||||||| ||||||||||||||||| ||||| ||||| |||||||| ||||| || |||||||| ||||||||||||||||||||||| ||||| ||||| ||||
gtacccccggccccatccaccgaaccaatcgatc-gtactttcgcagtttcttgtgagctagggtttctgggattccggatctgattgcttctggttgttggg--tggtgcagTCAAACCCGGAGAACACGGTAGGCGTGATGACAATGGCCGGGAAGGGTGTTCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTA

upper sequence: LOC_Os03g13970.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G147671_T02 (Zea mays), 3'ss of exon 2
--------------gtacgccaccgtccgacccgatcgatccgcgcggccttcgttgtgtgcgatttagggttct--gggctccggatctgactgttttttttttcgggggcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA
                 | ||| |  || |  | ||||||| |  |   |   |||   || |   |||||||    ||  ||||||||||| || || |  ||   | |     ||||||| |||||||||||||| || ||||| |||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||| ||||| ||||
gtgccaaccggcggtctctccatccacctattcaatcgatc-gaactttcgatgtttcctgtgggctagggtttctgggattccggatctgattgcttctggttgttgag-tgggtgcagTCGAACCCGGAGAACACAGTAGGCGTGATGACGATGGCCGGGAAGGGCGTCCGCGTGCTTGTCACTCCCACCAGCGACCTCGGGAAGATTCTCGCCTGTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88351142|gb|CI623364.1|CI623364
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTAATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88314956|gb|CI610015.1|CI610015
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88763078|gb|CI772634.1|CI772634
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|163919850|gb|EG710352.1|EG710352
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33657883|gb|CF280497.1|CF280497
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33654150|gb|CF276764.1|CF276764
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88721373|gb|CI744672.1|CI744672
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGNCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88445093|gb|CI589571.1|CI589571
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88693555|gb|CI737130.1|CI737130
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88390322|gb|CI605775.1|CI605775
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88391146|gb|CI595400.1|CI595400
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88745425|gb|CI768785.1|CI768785
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|58663975|gb|CK052661.1|CK052661
EST:     TCCAGGCTCAGGCCGACGCTGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33679625|gb|CF307864.1|CF307864
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88358175|gb|CI605100.1|CI605100
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88354858|gb|CI614136.1|CI614136
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88357310|gb|CI622159.1|CI622159
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88826558|gb|CI777123.1|CI777123
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33681541|gb|CF309780.1|CF309780
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCCGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88434013|gb|CI586891.1|CI586891
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88390341|gb|CI607377.1|CI607377
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88414977|gb|CI601809.1|CI601809
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88346731|gb|CI657282.1|CI657282
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88736526|gb|CI760034.1|CI760034
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88723553|gb|CI747063.1|CI747063
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88735528|gb|CI759036.1|CI759036
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33654616|gb|CF277230.1|CF277230
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|2309803|gb|C25958.1|C25958
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88362712|gb|CI608861.1|CI608861
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88354146|gb|CI637712.1|CI637712
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|33681744|gb|CF309983.1|CF309983
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88425160|gb|CI564677.1|CI564677
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88356912|gb|CI620800.1|CI620800
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88742964|gb|CI766472.1|CI766472
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88360077|gb|CI610191.1|CI610191
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88742045|gb|CI765553.1|CI765553
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88718520|gb|CI742030.1|CI742030
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88729610|gb|CI751413.1|CI751413
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88736188|gb|CI759696.1|CI759696
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88394930|gb|CI607657.1|CI607657
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|218488524|gb|FG963297.1|FG963297
EST:     ACCTCATCTGTGGCGCCAAGA-CCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGGGTG
genomic: ACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
EST: gi|88417172|gb|CI576246.1|CI576246
EST:     CCAGGCTCAGGCCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         C
genomic: CCAGGCTCAGGCC-GACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcag-
EST: gi|88417172|gb|CI576246.1|CI576246
EST:     CCAGGCTCAGGCCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         C
genomic: CCAGGCTCAGGCC-GACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcag-
EST: gi|86890984|gb|CI305857.1|CI305857
EST:     TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAG                         TCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG
genomic: TCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 66 (upstream exon), 69 (downstream exon)
Score: 100

CATAGACAACTCGGAGTGGATGCGGAACGGCGACTACTCGCCGTCGCGATTCCAGGCTCAGGCCGACGCCGTCAACCTCATCTGTGGCGCCAAGACCCAGgtacgccacc ... gcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttagggttctgggctccggatctgactgttttttttttcgggggcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA
                     atctgac  putative branch site (score: 100)
                                              cctttgc  putative PPT
                          actgtttttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgccaccgtccgacccgatcgatccgcgcggccttcgttgtgtgcgatttagggttctgggctccggatctgactgttttttttttcgggggcctttgcagTCCAACCCGGAGAACACGGTGGGCGTCATGACGATGGCCGGAAAGGGCGTGCGCGTGCTCGTCACTCCCACCAGCGACCTCGGCAAGATCCTCGCTTGTA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA