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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g12680.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g12680.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G043470_T01 (Zea mays), 3'ss of exon 2
gtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcag--cgatgcaaataatcaatgccatc-atcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAG
               ||| |  |  |     ||| |||     | |||   |    ||      ||  |  |   | || | |  |||| |  |    |||||||||| || | || | ||||||||||||||| | |||||||||||||| || |||||| ||||||||||||||||||||||||| || ||||||||||| ||||| ||||| || |||||||||
------------gtgagcaccca--cactagtgaattcacctgaataactgtcggccactgccaaatgcttgctgctattctgaccgatacccactggcaatgccatccataaatctgcgctcacagGATGCTCCTTTACGAGTTCGTCGAAAATGGCAACTTGGAGCAGTGGCTGCACGGCGACGTCGGACCGGTCAGCCCTCTGACCTGGGAAATACGGATGAAG

upper sequence: LOC_Os03g12680.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G478876_T01 (Zea mays), 3'ss of exon 2
gtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAG
|| ||      ||| | | ||        || || |||      | |   | |  ||  ||     || |  |        |  ||| |  |    ||||||||| |    || | | ||||||||||||| | |||||||||||||| ||||| ||||||||||||||||||||||||||||| || |||||||||||  |||| ||||| || |||||||||
gtgagcacccacactaacactag-----tgacgaattcaccctgtcagccact--gccaaatgcttaatgctgatagtctgattgatactcactggcaatgccatgaa---tctgcgttcacagGATGCTCCTTTACGAGTTCGTCGAAAACGGGAACCTGGAGCAGTGGCTGCACGGCGACGTCGGTCCGGTCAGCCCTTTGACCTGGGAAATACGGATGAAG

upper sequence: LOC_Os03g12680.2 (Oryza sativa), 3'ss of exon 2
lower sequence: PP1S358_6V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaagtgatgccaccagctctgaatcctcgatgagttctgagcattaataattcagcagaagtgaaaacgggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCC-CGCTGACATGGGACATTCGGATGAAG
                               ||| |      | ||  |  | |       ||      | ||  ||   |   ||||    |  |  |   | |      |   || |  ||||||||| |||||||||| ||| || || || ||| |||||||||||||||| ||   |  || |||   ||    | ||  |||||||    || |||  |
------------------------------gtgaatgtcatcccttcttcctgcccagtttgttgtgtggtggcgcagctccttgatgttctttgttgacctcgtttctggtggctgtt-gcagGATGCTTGTGTACGAGTACGTGGATAATGGAAACTTGGAGCAGTGGCTGCATGG-ACCTCTGTCCCAAACAAATACACTTCCATGGGAAGCCCGCATGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggggacaatgcagcgatgcaaataatcaatgccatcatcactccgtgctcacagGATGCTCGTGTACGAGTTCGTCGAGAACGGCAACCTGGAGCAGTGGCTGCACGGCGACGTTGGCCCGGTCAGCCCGCTGACATGGGACATTCGGATGAAG
                    aaataatcaat  TA-rich tract