1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctccataaataaattgtcatactagagaaactgtcatattcctttataatgaaaatatttttttagtaatgattcaaatccttttttttttctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGATAACTGCACTGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTTGGTGG
species | Oryza sativa |
transcript | LOC_Os03g11970.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGEST: gi|88308811|gb|CI654094.1|CI654094
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAG
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGEST: gi|88391691|gb|CI600880.1|CI600880
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAG
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGEST: gi|27545580|gb|CA763794.2|CA763794
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGG
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGEST: gi|44678935|gb|CR292369.1|CR292369
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAG
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGEST: gi|29638414|gb|CB643423.1|CB643423
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAG
EST: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGEST: gi|4715111|gb|AU056228.1|AU056228
genomic: CTCCTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAG
EST: TCCTTACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAG TTGGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCA
genomic: TCC-TACAAGGAAGACGCTGCTAACAACTTTGCTCGTGGGCACTACACAGgtgtgatgct ... tctgctgcagTT-GGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCA
ataatgaaaatatttttttagtaatgattcaaatccttttttttttctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGATAACTGCACTGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTTGGTGG
tccttttttttttctg CT-rich tract
aaaatatttttttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctccataaataaattgtcatactagagaaactgtcatattcctttataatgaaaatatttttttagtaatgattcaaatccttttttttttctgctgcagTTGGAAGAGAGGTGGTAGATCTTTGCCTTGATCGACTAAGAAAACTGGCAGATAACTGCACTGGTCTCCAAGGTTTTCTGGTTTTCAATGCTGTTGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - aaataaa
- - - - - - - - - - - -agagaaac
- - - - - - - - - - - - - - - - - - - - - - - -aatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattca