1 5' 3' | 2 5' 3' | 3 5' 3' |
...aacccaagttgggggtgctccatggagcagctgaagtgttctctcatgccatcttgcaattgttatttttcatttgttctgattaaattacttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG
species | Oryza sativa |
transcript | LOC_Os03g11960.4 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCG GGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGEST: gi|88352523|gb|CI654348.1|CI654348
genomic: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGgttcgttgcc ... cttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATG
EST: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCG GGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGEST: gi|58030755|gb|CX728298.1|CX728298
genomic: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGgttcgttgcc ... cttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATG
EST: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCG GGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATG
genomic: CTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGgttcgttgcc ... cttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATG
atgccatcttgcaattgttatttttcatttgttctgattaaattacttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG
ttctgat putative branch site (score: 3)
cttgtccc putative PPT
ttatttttcatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacccaagttgggggtgctccatggagcagctgaagtgttctctcatgccatcttgcaattgttatttttcatttgttctgattaaattacttgtcccagGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
aacccaa
- - - - - - - gtgctcc
- - - - - - - - - - - - - gcagctg
- - - - - - - - - - - - - - - - - - - - - - catgcca
- - - - - - - - - - - - - - - - - - - - - - - - - -tcttgca