1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgttctattgttaacaatgcaattacatgacaaaaaatcatttcctcctcgcattattttaataatgtatcttgcatctatgtttaccctttgatgctgtcttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACAACTTTGGGGAATTGTTAGCTCACCCGATT
species | Oryza sativa |
transcript | LOC_Os03g11570.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTATCTGGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GGATTTGGCATTTGATCTCTCCEST: gi|29673013|gb|CB669288.1|CB669288
genomic: GTATCTGG-CTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagG-ATTTGGCATTTGATCTCTCC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|33683496|gb|CF311735.1|CF311735
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|40492914|gb|BX900508.1|BX900508
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|428304|gb|D24452.1|D24452
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|19425283|gb|D41570.2|D41570
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|11443013|gb|BF430900.1|BF430900
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|117217002|gb|CT845303.1|CT845303
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACEST: gi|428076|gb|D24224.1|D24224
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
EST: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTG GATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
genomic: TGTATCTGGCTTACACTACTGTAGAGTCACTCTCTGAGTCTTTCAAACTGgtatgttcta ... cttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTAC
attttaataatgtatcttgcatctatgtttaccctttgatgctgtcttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACAACTTTGGGGAATTGTTAGCTCACCCGATT
ctgtctt CT-rich tract
aataatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttctattgttaacaatgcaattacatgacaaaaaatcatttcctcctcgcattattttaataatgtatcttgcatctatgtttaccctttgatgctgtcttgtgtcagGATTTGGCATTTGATCTCTCCCTTGCAGCCTTGCTTGGTGATAACATCTACAACTTTGGGGAATTGTTAGCTCACCCGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA