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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagaaacccaaaggatcattgtgatacaatttccaattcatataagatgctttgggctgatgtatgtccacaattctaggtgttttcattcaccacatggaataaatgctgagctcatttttttcttccaactttgttacacatttcttgcagCTAGACATAGAGTATGACAAGTTTATCCGCACAACTGATCGTAAGCATGAGGCAGTTGTCAATGACTTCTATTCCAGAGTGCTAGATAGTGGTGACATAT

Basic information

species Oryza sativa
transcript LOC_Os03g11120.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g11120.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G029055_T02 (Zea mays), 3'ss of exon 2
gtagaaacccaaaggatcattgtgatacaatttccaattcatataagatgctttgggctgatgtatgtccacaattctaggt----gttttca----ttcaccacatggaataaatgctgagctcatttttttcttccaactttgttacacatttcttgcagCTAGACATAGAGTATGACAAGTTTATCCGCACAACTGATCGTAAGCATGAGGCAGTTGTCAATGACTTCTATTCCAGAGTGCTAGATAGTGGTGACATAT
                                                              ||||||| ||||  | | ||    |||| ||    ||      |  || ||||   ||||||||  |||  | ||||| |||||| |||||||||||||| |||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||| || || ||||||||||||||| || | | ||| |||||||
--------------------------------------------------------------gtatgtctacaacaccaagtttcagtttacaatactttttactacagagtaaaccatgagctcagctttgccctccaaatttgtttcacatttcttgcagTTAGACATAGAATATGACAAGTTTATTCGCACAACGGATCGTAAGCATGAGGCTGTTGTGAACGAATTCTATTCCAGAGTGTTAAACAATGGCGACATAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggaataaatgctgagctcatttttttcttccaactttgttacacatttcttgcagCTAGACATAGAGTATGACAAGTTTATCCGCACAACTGATCGTAAGCATGAGGCAGTTGTCAATGACTTCTATTCCAGAGTGCTAGATAGTGGTGACATAT
                                           catttctt  CT-rich tract
                  atttttttctt  TA-rich tract