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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA

Basic information

species Oryza sativa
transcript LOC_Os03g08440.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G126821_T02 (Zea mays), 3'ss of exon 1
gtgaaaatgatcaccatgtcacggtagtgcg----ttggtgaattggg--tacagt---attgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
||||| |  ||  |  | |||  ||   |      || |||| | |    | ||||   || ||  ||| ||  ||||||  ||     ||| |||||||||| ||||||||||||||||| |||||||| ||||||||||||||||| || || || || |||||||||||||||||||||||||| || |||||||
gtgaacagaatttcagtttcaaagttcagaaatatttagtgagtggaccctgcagtgtgatggtgaactaat--tgttatggtggtgattgtttgcagCCAATTAAGGAGTCTGCTCTGGGGAACATCCCCACCATTGCCTTCTGTGATACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCGAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G380152_T01 (Zea mays), 3'ss of exon 1
gtgaaaatgatcaccatgtcacggtagtgcgttggtgaat-tgggtacagtattgtt-tactgatcgtgttatcctgaatta-tgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
|||||    ||  |  |  ||  ||  |       |   | ||  | | | | |||  |  ||  |   || |  ||  | | ||| ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||
gtgaagggaatttctgttccaaagttcttacgaaatatttatgaatgctgcagtgtgatggtggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTAGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCGATGCGGTATGTCGATATCGGCATCCCTGCCAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G145308_T01 (Zea mays), 3'ss of exon 2
gtgaaaatgatcaccatgtcacggt--------agtgcgttggtgaattgggtacagtattgtt-tactgatcgtgttatcctgaattat-gtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
||||| |  |      | |||  ||        | |   |   |  | ||||| | | |||||  |  ||| |   |  |  ||  | || || |||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||| |||||||||||||| ||||||||||
gtgaagagaagttttgtttcaaagttcttaagaaatatatgcattgagtgggtgctgcattgtgatggtgaactaatagttatgcgtaattgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCTTTCTGCGACACTGACTCTCCCATGCGGTATGTTGATATCGGCATCCCAGCCAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G099657_T01 (Zea mays), 3'ss of exon 2
gtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaatta-tgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
|||||    ||  |  |  ||  ||  |         | ||  | |   |   || |  ||  |   || |  ||  | | ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || || || |||||||||||||||||||||||||| ||||||||||
gtgaagggaatttctgttccaaagttct-tacgaaatatttatgaatgctgcagtgtgatggactaattgtagtgcgtaactgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCGACCATTGCCTTCTGCGACACTGACTCTCCCATGCGGTATGTCGATATCGGCATCCCAGCCAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G092719_T01 (Zea mays), 3'ss of exon 2
gtgaaaatgatcaccatgtcacggtagtgcg----ttggtgaattggg--tacagt---attgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
|||| |||  |  |  | |||  ||  ||      ||  ||| | |    | ||||   || ||  ||| ||  |||||| |||      || |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| || || || |||||||| ||||||||||||||||| || |||||||
gtgacaatagtttcagtttcaaagttctgaagtacttactgagtggaccctgcagtgtgatggtgaactaat--tgttatgctggtaatcgtttgcagCCAATCAAGGAGTCTGCTCTGGGGAACATCCCAACCATTGCCTTCTGTGACACTGACTCTCCCATGCGGTACGTCGATATCGGCATCCCAGCGAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA08G17000.1 (Glycine max), 3'ss of exon 2
------------------------------------------------------------------------------------------------------gtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
                                                                                                       ||||| |  | ||  |  |  | |  ||  ||  ||     |       ||  ||| |   |  ||||||  ||| || |||  |||||| ||||||||   |||||| ||||| || || || ||||| || |||||||| ||||| |||||||||||||| ||| |||| ||||| ||||| || |
gttattacccctttagaagttataaccagagagtattaaaggtgttttcaggagttatattgttcaacttttaaccgtcaaggatgtttgttgagggttggtttgaaatttctgacagtaac-tgatcttgtttttttgtgcctgtcctgccatgatttgcc--ttatgttat--tgatttttgt--gcagCCTATCAAGGAAGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTCGGGATCCCTGCCAATAATA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GLYMA15G42150.1 (Glycine max), 3'ss of exon 2
----------------------------------------------------------------------------------------------gtgaaaatgatcaccatgtcacggtagt--gcgttggtgaattgggtacagtattgtttactgatcgtgttatcctga-attatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
                                                                                              |||    |    |   ||| || ||| |   | ||| |   ||| || | || |||   ||   | || ||||  |     | ||| ||||||| |||||||||  |||||| ||||| || || || ||||| || || ||||| ||||| |||||||||||||| ||| | || || || ||||| || |
gttattacccctttagaagttagaaccagagagtatttaaggtgttttcaggagttatatagttcaactcttcaccgtcaaggatgtttgttgagtgttggtttgaaatttgtgacagtaattaaccttgttattttgtgt-ctgtcttgcc-acaatttgtcttatgttattgatttgtgtgcagCCTATCAAGGAGGGTGCTCTTGGAAATATTCCAACTATTGCTTTTTGCGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCCAATAATA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT3G04770.1 (Arabidopsis thaliana), 3'ss of exon 2
gtgaaaatgat-caccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaattatgtctgc-agCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
||  |    ||      |  | |   |||  ||   | || || |||   | ||| ||  || |  ||   |  ||  || ||| ||| |||||||||||||   |||| |||||||||| || || ||||||||||||||||| ||||| |||||| | | |||||| || || || || || |||||||
gtatattgaatgtgttttacctcatcagt-tgtgatttaactgtgtaggtttttggtt-ttgctaatgcggttttggtttgtgtttgccagCCAATCAAGGAAGGTGCTTTGGGAAACATTCCAACTATTGCCTTCTGTGACACGGATTCTCCAATGGGATTTGTCGACATTGGTATTCCTGCTAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: AT1G72370.2 (Arabidopsis thaliana), 3'ss of exon 2
gtgaaaatgatcaccatgtcacggtagtgcgttggtgaattgggtacagtattgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
  | |||   ||  ||| | |   |  |    | |||| |     |   | ||  ||| ||||     | || ||  |  ||| ||||||| ||||||||   |||| |||||||||| || | |||||| ||||||||||| || || |||||| | | ||| || || || ||||| ||||||||||
--gtaaac--tcttcatatgat--tcatatactagtgattgattaatgatttttgttattgataa--atgtcttgtgt-gtgt-tgcagCCTATCAAGGAAGGTGCTTTGGGAAACATTCCAATCATTGCTTTCTGTGACACAGACTCTCCAATGAGATTTGTTGACATTGGTATCCCAGCCAACAACA

upper sequence: LOC_Os03g08440.1 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv09s0002g00610.t01 (Vitis vinifera), 3'ss of exon 2
-------gtgaaaatgatc-accatgtcacggta-gtgcgttggtgaattgggta---cagtattgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
       ||  |  | ||  | | |   |  ||   || ||| |||   || ||     |||   |  |  | |   | | |||   |    ||| | ||||| || |||||  |||| || |||||||| || || ||||| ||||||||||| |||||||||||||||||||| || || || ||||| ||||| ||||
tattttggttcatctaatttatctttgtatagtgtatgagtttgtgttatgagttatttagtccaggatttttact-tatcatcacaataactgttttcagCCTATTAAGGAAGCTGCACTAGGAAACATTCCAACTATTGCTTTCTGTGACACTGATTCCCCAATGCGGTATGTTGACATTGGTATCCCAGCCAATAACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58680347|gb|CK069034.1|CK069034
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|163923447|gb|EG709388.1|EG709388
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58663831|gb|CK052517.1|CK052517
EST:     CAGCGAGCCCCGGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: CAGCGAGCCCCG-TCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58596074|gb|CK006602.1|CK006602
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTG
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTG
EST: gi|58601723|gb|CK012251.1|CK012251
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58668357|gb|CK057043.1|CK057043
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58690734|gb|CK079421.1|CK079421
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58675846|gb|CK064533.1|CK064533
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|29659339|gb|CB655614.1|CB655614
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58677636|gb|CK066323.1|CK066323
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGT
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGT
EST: gi|163921617|gb|EG712163.1|EG712163
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCA
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCA
EST: gi|33655180|gb|CF277794.1|CF277794
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|218481030|gb|FG967556.1|FG967556
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAAGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58682740|gb|CK071427.1|CK071427
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|218482310|gb|FG952700.1|FG952700
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|4715734|gb|AU056850.1|AU056850
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGGAGTCTGCTCTGGGAAACATCCCGANCATTGCCTTCTGTGA
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGG-AGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGA
EST: gi|33654088|gb|CF276702.1|CF276702
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58601986|gb|CK012514.1|CK012514
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGGCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58677275|gb|CK065962.1|CK065962
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58676217|gb|CK064904.1|CK064904
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58670668|gb|CK059354.1|CK059354
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|218483629|gb|FG950327.1|FG950327
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|3761200|gb|C98448.1|C98448
EST:     AGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGGACCGATTCACCAG                         CCAATCAAGGAGTCTGGCTCTGGGAAACATCCCGACCATTGCCTTCTGTG
genomic: AGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGG-ACCGAT-CACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTG-CTCTGGGAAACATCCCGACCATTGCCTTCTGTG
EST: gi|218478358|gb|FG948798.1|FG948798
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|29685943|gb|CB682218.1|CB682218
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58587885|gb|CF986193.1|CF986193
EST:     CAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGA
genomic: CAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACC-AGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGA
EST: gi|218487503|gb|FG946542.1|FG946542
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCC
EST: gi|58677165|gb|CK065852.1|CK065852
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58654640|gb|CK043320.1|CK043320
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58679536|gb|CK068223.1|CK068223
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58595285|gb|CF993593.1|CF993593
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATT
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATT
EST: gi|218490286|gb|FG950711.1|FG950711
EST:     TCAACGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58662560|gb|CK051246.1|CK051246
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58690941|gb|CK079628.1|CK079628
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|33801224|gb|CF326485.1|CF326485
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58659869|gb|CK048549.1|CK048549
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTC
EST: gi|58601418|gb|CK011946.1|CK011946
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58681996|gb|CK070683.1|CK070683
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58682091|gb|CK070778.1|CK070778
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58601058|gb|CK011586.1|CK011586
EST:     CAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGGACCGATCACCAG                         GCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTG
genomic: CAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGG-ACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTG
EST: gi|58676560|gb|CK065247.1|CK065247
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58597385|gb|CK007913.1|CK007913
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|33798863|gb|CF325288.1|CF325288
EST:     GCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: GCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58676191|gb|CK064878.1|CK064878
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGC
EST: gi|29687031|gb|CB683306.1|CB683306
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58685709|gb|CK074396.1|CK074396
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58677336|gb|CK066023.1|CK066023
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58655194|gb|CK043874.1|CK043874
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|218502395|gb|FG968311.1|FG968311
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|32948394|gb|BP184966.1|BP184966
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATT
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATT
EST: gi|58678598|gb|CK067285.1|CK067285
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58675779|gb|CK064466.1|CK064466
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|88261065|gb|CI364641.1|CI364641
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58653197|gb|CK041877.1|CK041877
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58681348|gb|CK070035.1|CK070035
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|117242413|gb|CT842992.1|CT842992
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACCGACCCAAGGACTGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|33680253|gb|CF308492.1|CF308492
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTTACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|29641192|gb|CB646199.1|CB646199
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|33796634|gb|CF324185.1|CF324185
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|218501920|gb|FG954609.1|FG954609
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGAC
EST: gi|58604799|gb|CK015327.1|CK015327
EST:     TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAG                         CCAATCAAGGAGTCTGCTCTGGGAAACATCCC
genomic: TCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 75 (upstream exon), 72 (downstream exon)
Score: 137

TGCTGGAAGGCATACGCCTGGTACATTTACCAATCAGCTCCAGACCTCCTTCAGCGAGCCCCGTCTGCTCATCCTCACTGACCCAAGGACCGATCACCAGgtgaaaatga ... atgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgaattgggtacagtattgtttactgatcgtgttatcctgaattatgtctgcagCCAATCAAGGAGTCTGCTCTGGGAAACATCCCGACCATTGCCTTCTGTGACACCGATTCCCCAATGCGGTATGTCGATATCGGCATCCCGGCCAACAACA
                      tactgat  putative branch site (score: 137)
               tattgttta  TA-rich tract