1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatcactaatcatgccacttgggactagtgatctgcatcggatatcatgtttatttactcctatacttgtcatctttgcttcacaatccttttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGATGAAGACAAGGAGGTTCAAGATGCTCTGTTAAACCCTGATCCAAGTACAA
species | Oryza sativa |
transcript | LOC_Os03g06120.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGG GAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGATEST: gi|27554129|gb|CA998029.1|CA998029
genomic: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaaaa ... tttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
EST: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTGGACAACGCCCGCGTCAGG GAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
genomic: ACCTCCGCCTCGTCCCGCTCATCACCCTCGTCGACAACGCCCGCGTCAGGgtcggtaaaa ... tttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGAT
catgtttatttactcctatacttgtcatctttgcttcacaatccttttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGATGAAGACAAGGAGGTTCAAGATGCTCTGTTAAACCCTGATCCAAGTACAA
caatccttttttttc CT-rich tract
ttttttttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatcactaatcatgccacttgggactagtgatctgcatcggatatcatgtttatttactcctatacttgtcatctttgcttcacaatccttttttttcagGAGCGGATGGAATACATTGAAAGGGATCAATGTGAATATTCTTTTGATGATGAAGACAAGGAGGTTCAAGATGCTCTGTTAAACCCTGATCCAAGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG