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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccttttttaaatgatcttattaccttctctctcttatttttacagattttagaattaacctgtagcctctgtttgtttgtctgctccaatttctgcagGTTCTTGAGTTTGAGTTGGGCAAGGAGGTTGTGAACGTAGCCTGAACCTGACCTGAGATTGTGAACGTAATTTTGGGGGGAAAGGTTGTTCTGTACTGTC

Basic information

species Oryza sativa
transcript LOC_Os03g05390.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88973492|gb|CI717920.1|CI717920
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88670150|gb|CI724266.1|CI724266
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88673593|gb|CI727706.1|CI727706
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|58666157|gb|CK054843.1|CK054843
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88670805|gb|CI724921.1|CI724921
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88416015|gb|CI594127.1|CI594127
EST:     TGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88972840|gb|CI717566.1|CI717566
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|58665102|gb|CK053788.1|CK053788
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|87009766|gb|CI310869.1|CI310869
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88695197|gb|CI739235.1|CI739235
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88362212|gb|CI608603.1|CI608603
EST:     CGCCCCTACTCCGA-G-------
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88671208|gb|CI723128.1|CI723128
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC
EST: gi|88594485|gb|CI714443.1|CI714443
EST:     CGCCCCTACTCCGAGGATACACC
genomic: CGCCCCTACTCCGAGGATACACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agattttagaattaacctgtagcctctgtttgtttgtctgctccaatttctgcagGTTCTTGAGTTTGAGTTGGGCAAGGAGGTTGTGAACGTAGCCTGAACCTGACCTGAGATTGTGAACGTAATTTTGGGGGGAAAGGTTGTTCTGTACTGTC
         aattaac  putative branch site (score: 2)
                                              tttctgc  putative PPT
     ttagaattaa  TA-rich tract