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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactttcgatttctcttagatccctggatcgtagcatcctgaaccggaagctgcaattgctgtatgagaccatatttgggatcagatccccatgctaatttgggggctctacggaatgttctgatttgttggtattgcgtgatcagATTTGTGAGTGCATCACCTCGGCCCCGTTCGACGCCATAGATATCACGAGGGAG

Basic information

species Oryza sativa
transcript LOC_Os03g03400.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03400.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G089860_T02 (Zea mays), 3'ss of exon 2
gtaagactt--tcg-----atttctcttagatccctggatcgtagcatcctgaacc--ggaagctgcaattgctgtatgagacc-atatttgggatcagatccccatgctaatttgggg-----gctct------acggaatgttctgatttgttggtattgcgtgatcagATTTGTGAGTGCATCACCTCGGCCCCGTTCGACGCCATAGATATCACGAGGGAG
||||| | |  | |     |  |  |  ||||| |||  |  || | || || ||   || |  || | |||   | ||| |||     ||||  || |||||   ||  | || || |      ||||      || |||||||    ||| ||||| |||  |||||||||||| ||||||||||| |||| ||| | | | ||||||||| |||| ||||||
gtaagccctcgttgtgcgtaacttgcacagatcgctgcctgataacttcttgcactctgggatttgtatttgacatctgaaacccgcgcttggtctctgatccg-gtgtcagttaggcgcactcactctcatctcacagaatgtttccttttattggtgttggctgatcagATTTGCGAGTGCATCACTTCGGGCCCATCCCATGCCATAGATGTCACAAGGGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgctaatttgggggctctacggaatgttctgatttgttggtattgcgtgatcagATTTGTGAGTGCATCACCTCGGCCCCGTTCGACGCCATAGATATCACGAGGGAG
                                atttgtt  TA-rich tract