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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgcacacacacgcaccgtccgcacgacgccgcgcgtcgctcgtgtaaccgtgttggttttgccttgccattttgcgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGCCCGCGAGACGGGCCGT

Basic information

species Oryza sativa
transcript LOC_Os03g03370.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G382534_T01 (Zea mays), 3'ss of exon 2
------------------------------gtaagcgcacacacacgcaccgtccgcacgacgccgcgcgtcgctcg---tgtaac-cgtgttg--gttttgccttgccattt-tgcgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCG--CCCGCGA-GACGGGCCGT
                              |   || | | | |  |    |    || |       |  | | |||   |||  | ||   ||  || |||    |   |||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||   
gtgagttcgcccactcgtcctcggcatgccgcgggc-cgcgc-cgtgtggtgggttcatggatggatggatggatcgatctgtggcgcggactgacgtgttggtgggtggtttgcgtgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGGGCCCGCGACGACGGGC---

upper sequence: LOC_Os03g03370.2 (Oryza sativa), 3'ss of exon 2
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 3'ss of exon 2
----gtaagcgcacac-acacgcac-cgtccgcacgacgccgcgcgtcgctcgtgtaaccgtgttgg-ttttgcct---tgccattttgcg-cagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGCCCGCGAGACGGGCCGT
    || |||  || | | | ||   | |         || |       || |   ||   || ||  | |    |   |||  ||      ||||||||||||||||| |||||||||||||| |||   ||||| ||||| || || |||||||| |||||||||                            
gtaagttagctaacgctataagctttcatgtattaactgctgaaaaatccttgaagaaagatgatgaatctcaagtgggtgctgttgattatcagGTGGGGATGGAGTTTTGGGCGCGGTGGGCTCACAAAGCGCTCTGGCATGCTTCACTGTGGCATATGCACGAG----------------------------


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gacgccgcgcgtcgctcgtgtaaccgtgttggttttgccttgccattttgcgcagGTGGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTGTGGCACGCGTCGCTGTGGCACATGCACGAGTCGCACCACCGCCCGCGAGACGGGCCGT
                 gtgtaac  putative branch site (score: 3)
                                          ccatttt  putative PPT
                                            atttt  TA-rich tract