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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaccattcactcaatgcgccatttcccttgtaattaggctgtctccctgctgcaatagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA

Basic information

species Oryza sativa
transcript LOC_Os03g02690.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88425281|gb|CI564798.1|CI564798
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: gi|58672859|gb|CK061545.1|CK061545
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: gi|27546884|gb|CA764989.2|CA764989
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
EST: gi|58606567|gb|CK034600.1|CK034600
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCNCTGGAAATTCCGGTGCTCAATGATCTCAC
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCC-CTGGAAATTCCGGTGCTCAATGATCTCAC
EST: gi|29684781|gb|CB681056.1|CB681056
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAA
                  ctcttac  putative branch site (score: 3)
                                           ttgttcttct  putative PPT
                     ttacagtttataaat  TA-rich tract