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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattcaccattcactcaatgcgccatttcccttgtaattaggctgtctccctgctgcaatagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAGTATTGGCCTCTTCATTGTACTATA

Basic information

species Oryza sativa
transcript LOC_Os03g02690.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58672859|gb|CK061545.1|CK061545
EST:     AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAG                         ATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA
genomic: AGCTTGCAGGGGCCATAGATTCTCAGTGTATAGGCCTAGATGCAGGAGAGgtattcacca ... gttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctgcttgttctttgtctcttacagtttataaatgccggcattgttcttctagATAAGTGGCATGGAAGAAGCCCTGGAAATTCCGGTGCTCAATGATCTCACAATGGTTCTGGGCTCAATTGCACAAGTATTGGCCTCTTCATTGTACTATA
                  ctcttac  putative branch site (score: 3)
                                           ttgttcttct  putative PPT
                     ttacagtttataaat  TA-rich tract