Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactaacgatgatatccttccttgcttgctagtactagttgatacttgtatcgaacagcagttaactcagcgtcaggcaacttatgttctttcaactgtttctgtcttgcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG

Basic information

species Oryza sativa
transcript LOC_Os03g02590.2
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g02590.4 (Oryza sativa), 3'ss of exon 1
lower sequence: GRMZM2G029824_T03 (Zea mays), 3'ss of exon 1
gtcactaacgatgatatccttccttgcttgctagtacta-gttgatacttgtatcgaacagcagttaactcagcgtcaggcaacttatgttctttcaactgtttctgtcttgcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG
                ||  |||    |     || ||  |||  |       ||| ||       | |||| |      |    ||   |    |   || |   |  |   || | |||||||||||||||||||||| |||||||||||| || || || |||||||| || || || ||  ||||||| || 
---------------gtcagtccagattcagatgtgctgtgttcttctccccgtcgtac------cagctcaactgttctcggtgtagaataac-cgcttgatgtcgcatgtaatgtccagTGGGTCAATGATCTGCATGCTCTTATCAGCCCGCCGGCCAAAGGGACTCCGCTCACCCTCGTTCTGCTTGGCAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88676888|gb|CI731001.1|CI731001
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88666259|gb|CI716415.1|CI716415
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTG
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTG
EST: gi|88905689|gb|CI712988.1|CI712988
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88670117|gb|CI724233.1|CI724233
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88413042|gb|CI578893.1|CI578893
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTACTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88593781|gb|CI713735.1|CI713735
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|218482457|gb|FG952466.1|FG952466
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88672349|gb|CI726465.1|CI726465
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88671724|gb|CI725755.1|CI725755
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88669283|gb|CI719421.1|CI719421
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88389461|gb|CI600630.1|CI600630
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|218487592|gb|FG945521.1|FG945521
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88666530|gb|CI718666.1|CI718666
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|25798400|gb|CA754361.1|CA754361
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88675189|gb|CI729302.1|CI729302
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88421294|gb|CI569139.1|CI569139
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|33799872|gb|CF325803.1|CF325803
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88665746|gb|CI715902.1|CI715902
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|87023911|gb|CI288264.1|CI288264
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88675736|gb|CI729849.1|CI729849
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGGACTC
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAA-TGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGG-ACTC
EST: gi|313084054|gb|HO213837.1|HO213837
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|218488960|gb|FG946367.1|FG946367
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88904724|gb|CI712023.1|CI712023
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAG
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAG
EST: gi|58589271|gb|CF987579.1|CF987579
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88405917|gb|CI591312.1|CI591312
EST:     ATGTCGACAGGTC-ACCAACCTTGCTCGCAAAGTTTTCCGGCTTCTAAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|86829554|gb|CI286745.1|CI286745
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88670155|gb|CI724271.1|CI724271
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|89171703|gb|CI720762.1|CI720762
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88674176|gb|CI728289.1|CI728289
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88672563|gb|CI726679.1|CI726679
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|84117673|gb|CD151440.1|CD151440
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88904917|gb|CI712216.1|CI712216
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88904694|gb|CI711993.1|CI711993
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCT
EST: gi|88908769|gb|CI714911.1|CI714911
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCT
EST: gi|88973600|gb|CI718028.1|CI718028
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATC
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATC
EST: gi|88593535|gb|CI713489.1|CI713489
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|33662420|gb|CF293387.1|CF293387
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|86829924|gb|CI288595.1|CI288595
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGG
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGG
EST: gi|88673268|gb|CI726043.1|CI726043
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|29687965|gb|CB684240.1|CB684240
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88441036|gb|CI693618.1|CI693618
EST:     TGTCGACAGGTCCACCACCCTTGCTCGCCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTCATCAGCCCTCCTGCCTAAGGGGACTCC
genomic: TGTCGACAGGTCCACCACCCTTGCTCGC-AAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGC-TAAGGGGACTCC
EST: gi|88675934|gb|CI730047.1|CI730047
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATNAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88669906|gb|CI724022.1|CI724022
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88905467|gb|CI712766.1|CI712766
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTA
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTA
EST: gi|58611378|gb|CK039090.1|CK039090
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88984133|gb|CI723689.1|CI723689
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|87023769|gb|CI288122.1|CI288122
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTG
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTG
EST: gi|88972526|gb|CI717266.1|CI717266
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88669463|gb|CI723381.1|CI723381
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|218482011|gb|FG963443.1|FG963443
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|38469451|gb|CF953582.1|CF953582
EST:     ATGTTGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|87005527|gb|CI287351.1|CI287351
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88582236|gb|CI699630.1|CI699630
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGC
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGC
EST: gi|88666043|gb|CI716199.1|CI716199
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCT
EST: gi|88676362|gb|CI730475.1|CI730475
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|86910407|gb|CI293060.1|CI293060
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88665670|gb|CI715826.1|CI715826
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|8955721|gb|BE229527.1|BE229527
EST:     ATGTCGACAGGTCCACCACCCTTKCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGMTCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTBCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|88668601|gb|CI719558.1|CI719558
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCT
EST: gi|88670255|gb|CI724371.1|CI724371
EST:     ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
genomic: ATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT
EST: gi|58585983|gb|CF984291.1|CF984291
EST:     GTTTTCCGGCTTCTCAAG                         TGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCGGAGGGGACTCCT
genomic: GTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 71 (upstream exon), 75 (downstream exon)
Score: 188

CCAATACGGCTCGAAGTTTATCAGTAACGGGCAGCCTGGCACGGCACAGGATGTCGACAGGTCCACCACCCTTGCTCGCAAAGTTTTCCGGCTTCTCAAGgtcactaacg ... gcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aactcagcgtcaggcaacttatgttctttcaactgtttctgtcttgcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG
 agttaac  putative branch site (score: 188)
               aacttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcactaacgatgatatccttccttgcttgctagtactagttgatacttgtatcgaacagcagttaactcagcgtcaggcaacttatgttctttcaactgtttctgtcttgcatttgcagTGGGTCAATGATCTGCATGGTCTTATCAGCCCTCCTGCTAAGGGGACTCCTCTTACACTGGTCTTGCTTGGGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC