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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacccctcttccattccattccattcacgtccttgttttttcccctattattgatggatcggctcccttatttgttcctctttttgatgtccatgatgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC

Basic information

species Oryza sativa
transcript LOC_Os03g01750.6
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g01750.2 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G052546_T01 (Zea mays), 3'ss of exon 2
gtgacccctcttccattccattccattcacgtccttgttttttcccctattattgatggatcggc--tcccttatttgttcctctttttgatgtccatga-tgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
||||  |        |||    |||| ||   |   |||| |      ||| |     | || ||  ||||  || |    ||   || | | ||  ||   |  ||| ||||||| || ||||| ||||||||||||||||| |||||||| 
gtgaggc--------ttcggacccatccatccctgcgtttctgtggacattctgttctgttctgcgttcccccatctcaatctgacttggttatctgtgggcggttagGCGATGGTCCGCGGCGGCAGTCGCCGATCAAACACCGTCAAAACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29640152|gb|CB645161.1|CB645161
EST:     CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTG                         ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
genomic: CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGgtgacccctc ... tgatgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
EST: gi|29680013|gb|CB676288.1|CB676288
EST:     CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTG                         ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
genomic: CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGgtgacccctc ... tgatgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
EST: gi|29641485|gb|CB646492.1|CB646492
EST:     CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTG                         ACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
genomic: CTCCAATCGTGGGATCCAGGTCCATGAGGCGGCCCTCGCCGCTCAATCTGgtgacccctc ... tgatgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgatggatcggctcccttatttgttcctctttttgatgtccatgatgactagACGATGGTTCGTGGCGGGAGTCGCCGATCAAACACTGTCAAAACC
                   ttatttgtt  TA-rich tract