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...gaacggtcaaacatgtgctaaaaagtcaactgtgtcaaacattttgaaacggagggagtatatatttttggtctgctcaaactcactaattgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAGTCAGCTCTCAGCAGGAGAAGATTGTCGCGTTGGAAG
species | Oryza sativa |
transcript | LOC_Os02g58590.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|33795166|gb|CF323456.1|CF323456
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|29626072|gb|CB631083.1|CB631083
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|117216832|gb|CT845224.1|CT845224
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|58672011|gb|CK060697.1|CK060697
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGAACGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCEST: gi|29628398|gb|CB633409.1|CB633409
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCC
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|29635787|gb|CB640796.1|CB640796
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCNNNNNNNCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGAEST: gi|58674189|gb|CK062875.1|CK062875
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGACTCGATCAEST: gi|29666803|gb|CB663078.1|CB663078
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGA-TCGATCA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|29633686|gb|CB638695.1|CB638695
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCA GAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAEST: gi|29681006|gb|CB677281.1|CB677281
genomic: TCCGCCTTTTTTCTACTCAGTCCCACTACGCCGACCGCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
EST: GCCTCGCACAAGCC TTAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
genomic: GCCTCGCACAAGCAgtcagtctct ... tgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAA
gaaacggagggagtatatatttttggtctgctcaaactcactaattgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAGTCAGCTCTCAGCAGGAGAAGATTGTCGCGTTGGAAG
cactaat putative branch site (score: 38)
agtatatattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaacggtcaaacatgtgctaaaaagtcaactgtgtcaaacattttgaaacggagggagtatatatttttggtctgctcaaactcactaattgcaatttagGAAAAATCCGAAAACCAATGCACCAGTCAACTCCGCTCCTTGATCGATCAAGTCAGCTCTCAGCAGGAGAAGATTGTCGCGTTGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - tcaaaca
- - - - - -catgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctgct