1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagctgttctctatgttggcaattgatcattttacactaccagaggatgatgtgcttgtctttggtgaagaaaaaaagattagtggtggaagtgtttttttttgtgacaaaagtatatctgctgctggagatgctttccttcctgatgttatcttgttgcacactgtccttttattggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGCCTCCAGTATTTGTAAATCACAATAACTCTGGTGGGCCAGCTGTTAGGG
species | Oryza sativa |
transcript | LOC_Os02g58020.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|157651259|gb|EX450893.1|EX450893
genomic: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: CGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|29664091|gb|CB660366.1|CB660366
genomic: CGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|66915780|gb|CX102628.1|CX102628
genomic: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|29627492|gb|CB632503.1|CB632503
genomic: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|117239285|gb|CT849366.1|CT849366
genomic: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGEST: gi|157651253|gb|EX450887.1|EX450887
genomic: ACAAAGCCAAGATTGAACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
EST: ACGGAAGAAGAGAAAGGATGAGAGAC-AAGAGAG GCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
genomic: ACGGAAGAAGAGAAAGGATGAGAGACAAAGAGAGgtaagctgtt ... attggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATG
agatgctttccttcctgatgttatcttgttgcacactgtccttttattggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGCCTCCAGTATTTGTAAATCACAATAACTCTGGTGGGCCAGCTGTTAGGG
tcctgat putative branch site (score: 122)
tccttttatt putative PPT
ttttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgttctctatgttggcaattgatcattttacactaccagaggatgatgtgcttgtctttggtgaagaaaaaaagattagtggtggaagtgtttttttttgtgacaaaagtatatctgctgctggagatgctttccttcctgatgttatcttgttgcacactgtccttttattggtgcagGCTCAATACCAAACGCATGTTGCTGAAATGGAGGCACTTAGGGCTGGAATGCCTCCAGTATTTGTAAATCACAATAACTCTGGTGGGCCAGCTGTTAGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT