1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgacataagctgctctaagagtagccaggttccccagtgtttaatcatgattatagtcatctgaaaggaatattctgtttcctcccctgtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA
species | Oryza sativa |
transcript | LOC_Os02g57854.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGCATCCCGACCAACAGCTCCTCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|88353826|gb|CI634617.1|CI634617
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|88334071|gb|CI641122.1|CI641122
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|112785856|gb|EE591550.1|EE591550
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|88363322|gb|CI643180.1|CI643180
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|88310002|gb|CI657426.1|CI657426
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|88339191|gb|CI633762.1|CI633762
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|86910935|gb|CI294835.1|CI294835
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGEST: gi|3761016|gb|C98270.1|C98270
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAG-TCCGCTCTCATCGCCATCATCGCCGACGAG GACACGNTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTNATCTGAGGEST: gi|88333055|gb|CI640898.1|CI640898
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
EST: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAG GACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
genomic: CCAGCATCCCGACCAACAGCTCCGCTCTCATCGCCATCATCGCCGACGAGgtacgccacc ... gtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGG
atcatgattatagtcatctgaaaggaatattctgtttcctcccctgtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA
gtttaat putative branch site (score: 13)
ttctgtttcctcccct putative PPT
attatagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgacataagctgctctaagagtagccaggttccccagtgtttaatcatgattatagtcatctgaaaggaatattctgtttcctcccctgtgtttgcagGACACGGTCACTGGGTTTTTGTTGGCTGGAGTTGGCAATGTTGATCTGAGGAAAAAGACAAATTACCTTATTGTTGATAACA
- - - - - gctgctc
- - - - - - - - - - - - - - - - - - - - - - - tcatgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catctga