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gttagcttactggaaatgacaaattaatagtttgtgatttctcgatggtgtcctacattcctacccagtgactgattattcctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAAAAGCTAAGAATGCTGAAGCTGCTGGGGCTTCTGCTATTATAATCATCA
species | Oryza sativa |
transcript | LOC_Os02g57710.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAEST: gi|88360695|gb|CI647705.1|CI647705
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTGGTTAGTGCAAAEST: gi|29632358|gb|CB637367.1|CB637367
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACCTGTAEST: gi|38475978|gb|CF960111.1|CF960111
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAAC-TGTA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAEST: gi|29627307|gb|CB632318.1|CB632318
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GGTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAEST: gi|29676693|gb|CB672968.1|CB672968
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GGTGCTGGAGATGTTTTGTTAGTGCGAAGGGGAAACTGTAAGTTCACTACAEST: gi|29677466|gb|CB673741.1|CB673741
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAEST: gi|29613254|gb|CB618267.1|CB618267
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAEST: gi|29623066|gb|CB628077.1|CB628077
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
EST: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAG GTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
genomic: GACTATTGTTAGCAGATCCTATTGACTGTTGTGATCCCCCCACACAGAAGgttagcttac ... ctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAA
atttctcgatggtgtcctacattcctacccagtgactgattattcctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAAAAGCTAAGAATGCTGAAGCTGCTGGGGCTTCTGCTATTATAATCATCA
gactgat putative branch site (score: 48)
ttattcctttatct CT-rich tract
tgattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagcttactggaaatgacaaattaatagtttgtgatttctcgatggtgtcctacattcctacccagtgactgattattcctttatctagGTTGCTGGAGATGTTTTGTTAGTGCAAAGGGGAAACTGTAAGTTCACTAAAAAAGCTAAGAATGCTGAAGCTGCTGGGGCTTCTGCTATTATAATCATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT