1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctcttcatatttttttcctcgataatatatttattgctcctcctatcaagtgctctgtgatgtgtaacacaccttcatgtacttcaattaccactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATGAGGAGACCAATGGCGGTGGTTACAGTTGTGATGTTTTTTCTCTGGATG
species | Oryza sativa |
transcript | LOC_Os02g57650.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAA ACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATEST: gi|3760219|gb|C97477.1|C97477
genomic: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAAgtaagtactc ... accactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAAT
EST: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAA ACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATEST: gi|29688769|gb|CB685044.1|CB685044
genomic: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAAgtaagtactc ... accactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAAT
EST: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAA ACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATEST: gi|58687453|gb|CK076140.1|CK076140
genomic: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAAgtaagtactc ... accactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAAT
EST: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAA ACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAAT
genomic: CTGAGGAAGATGGGAATTTCTCCCTTAAAACTAATGATGAGCCTTTACAAgtaagtactc ... accactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAAT
atcaagtgctctgtgatgtgtaacacaccttcatgtacttcaattaccactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATGAGGAGACCAATGGCGGTGGTTACAGTTGTGATGTTTTTTCTCTGGATG
gtgtaac putative branch site (score: 36)
ttcaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttcatatttttttcctcgataatatatttattgctcctcctatcaagtgctctgtgatgtgtaacacaccttcatgtacttcaattaccactacagACCCAAGAATACCAGCCAGAGATAACTCCTGTGAAAGCTCAAGGTTCAAATGAGGAGACCAATGGCGGTGGTTACAGTTGTGATGTTTTTTCTCTGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - tattgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtac