Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86507862|gb|CI150495.1|CI150495EST: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGCAG
genomic: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACC-A--AGgtagctataa ... gatccagc
EST:
gi|88985723|gb|CI033052.1|CI033052EST: CTCTCCGGACCTCACCCTCATCACCAAG GGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
genomic: CTCTCCGGACCTCACCCTCATCACCAAGgtagctataa ... gatccagcagGGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
EST:
gi|15853323|gb|BI806119.1|BI806119EST: CGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAG GGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
genomic: CGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGgtagctataa ... gatccagcagGGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
EST:
gi|86871627|gb|CI331004.1|CI331004EST: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGCAG
genomic: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACC-A--AGgtagctataa ... gatccagc
EST:
gi|88440444|gb|CI549325.1|CI549325EST: CTCACCCTCATCACCAAGCAG
genomic: CTCACCCTCATCACC-A--AGgtagctataa ... gatccagc
EST:
gi|89170410|gb|CI039687.1|CI039687EST: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAG GGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
genomic: AGACCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGgtagctataa ... gatccagcagGGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
EST:
gi|88434955|gb|CI549152.1|CI549152EST: CGTCAACGGCGGCGCGAACTTTCCGGACCTCACCCTCATCACCAAGCAG
genomic: CGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACC-A--AGgtagctataa ... gatccagc
EST:
gi|86534306|gb|CI174512.1|CI174512EST: CCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAG GGTCTGCGCGGCAACCTTTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
genomic: CCGTCAACGGCGGCGCGAACTCTCCGGACCTCACCCTCATCACCAAGgtagctataa ... gatccagcagGGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gatctaaacagagcctaatagctattttagcatactgttcgatcgttttgcctattttagcttactgttcgatagttttgccgatgatctgatccagcagGGGCTGCGCGGCAACCTCTACGCCACCGCGGCGCCGAGGATGTTGGCCGGCGCCGCCGCAGCGTGCCAGGAGCTGAAGAAGCGGGCAATGGCTAGCCCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC