1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggcatgacaatagtagactacacattgacaattcattcttgcgtttgcctggtttctcagtgcaatttatatgcatataacacccatgtaactttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG
species | Oryza sativa |
transcript | LOC_Os02g56550.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCT GGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAEST: gi|88727100|gb|CI750755.1|CI750755
genomic: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCTgtaagttttc ... actttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGA
EST: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCT GGTGACGTTCNTCTGCCAGGCEST: gi|27548820|gb|CA766802.2|CA766802
genomic: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCTgtaagttttc ... actttctcagGGTGACGTTCCTCTGCAAGGC
EST: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCT GGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAEST: gi|44668118|gb|CR281552.1|CR281552
genomic: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCTgtaagttttc ... actttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGA
EST: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCT GGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTCTGGAEST: gi|33690072|gb|CF318311.1|CF318311
genomic: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCTgtaagttttc ... actttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGA
EST: GTGACCTTTCCTACTTAGGTGGTTCGTGGAGTCGGGCTATCGGTTCAGCT GGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGA
genomic: GTGACCTTTCCTACTTAGGTGGTTCATGGAGTCGGGCTATCGGTTCAGCTgtaagttttc ... actttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGA
tgcctggtttctcagtgcaatttatatgcatataacacccatgtaactttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG
atgtaac putative branch site (score: 13)
ctttctc CT-rich tract
aatttatatgcatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggcatgacaatagtagactacacattgacaattcattcttgcgtttgcctggtttctcagtgcaatttatatgcatataacacccatgtaactttctcagGGTGACGTTCCTCTGCAAGGCGACTTCTCTGCTGAACACATGATTTTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
ggcatga
- - - - - - - - -ctacaca
- - - - - - - - - - - - - - - - - -ttcttgc
- - - - - - - - - - - - - - - - - - - - - - ttgcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgta