1 5' 3' | 2 5' 3' |
...cttcatttgacagttgtccgtttccatctattgtagcatgtaatttgcaagttttggatttatcgtactgttatatttatatgttttgcttggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACGAGGGGATGTAGAAATATTCATGAAATTCGCTAGAGCTGGATACAAGGAG
species | Oryza sativa |
transcript | LOC_Os02g56170.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AATACAAGTCATTCCTTCACTGCTGGACTTGCTCATAGTGTAGGCTTAAG GAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCA-TAGCACGEST: gi|29677362|gb|CB673637.1|CB673637
genomic: AATACAAGTCATTCCTTCACTGCTGGACTTGCTCATAGTGTAGGCTTAAGgtcagttctt ... tggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACG
EST: ACTTGCTCATAGTGTAGGCTAAAG GAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACGEST: gi|88335308|gb|CI650273.1|CI650273
genomic: ACTTGCTCATAGTGTAGGCTTAAGgtcagttctt ... tggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACG
EST: AATACAAGTCATTCCTTCACTGCTGGACTTGCTCATAGTGTAGGCTTAAG GAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCA-TAGCACG
genomic: AATACAAGTCATTCCTTCACTGCTGGACTTGCTCATAGTGTAGGCTTAAGgtcagttctt ... tggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACG
tgcaagttttggatttatcgtactgttatatttatatgttttgcttggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACGAGGGGATGTAGAAATATTCATGAAATTCGCTAGAGCTGGATACAAGGAG
ttttgctt CT-rich tract
tactgttatatttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcatttgacagttgtccgtttccatctattgtagcatgtaatttgcaagttttggatttatcgtactgttatatttatatgttttgcttggattccagGAAGCAACCCCTGCGTGTGTACAGCATGGTGAAATATGCCGCAATAGCACGAGGGGATGTAGAAATATTCATGAAATTCGCTAGAGCTGGATACAAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- tcatttg
- - - - - - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - atttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtactg