1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtcttttcgagtccttgagaatgtcagagcagaattcttcgtagttctaattctgcaagattgtgggggcaaatttacaagttcttacttcctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCA
species | Oryza sativa |
transcript | LOC_Os02g56000.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAG ATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCEST: gi|29659489|gb|CB655764.1|CB655764
genomic: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgtttgtgcgc ... cctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
EST: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAG ATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCEST: gi|29615714|gb|CB620726.1|CB620726
genomic: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgtttgtgcgc ... cctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
EST: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAG ATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCEST: gi|29615760|gb|CB620772.1|CB620772
genomic: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgtttgtgcgc ... cctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
EST: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAG ATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCEST: gi|29683381|gb|CB679656.1|CB679656
genomic: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgtttgtgcgc ... cctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
EST: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAG ATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
genomic: AGATCAAACTCAACAAGCAGCTGCCTTACCTTGTCGGCAACATCGTCGAGgtttgtgcgc ... cctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATC
tctaattctgcaagattgtgggggcaaatttacaagttcttacttcctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCA
ttcttac putative branch site (score: 2)
ttcttacttcctattt CT-rich tract
aaatttacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcttttcgagtccttgagaatgtcagagcagaattcttcgtagttctaattctgcaagattgtgggggcaaatttacaagttcttacttcctatttcagATATTGGAAATGAACCCCGAGGATGAGGCTGAAGAGGATGGTGCGAACATCGATCTGGATTCACAAAGGAAAGGAAAATGCGTTGTTTTGAAGACATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA