1 5' 3' | 2 5' 3' |
gtgcgtagagtactaaccttcgtctccactgatcagaaccgtttcttgattcttatggcgagccgtgctgacgatgatccaacttgcttcctgtttggtcttgtgcaatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCAACAGCTTCTTTCACGGCGTGCGAGCTGCATGCTGATGCTCCAGGATCG
species | Oryza sativa |
transcript | LOC_Os02g53690.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCEST: gi|86501126|gb|CI143759.1|CI143759
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCEST: gi|87040862|gb|CI195484.1|CI195484
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCEST: gi|88359107|gb|CI679624.1|CI679624
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGATTAATCTCTTGAAGAAGTCAAGAAGTGATCAACACGCGGAAGAAATCEST: gi|58669719|gb|CK058405.1|CK058405
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGAATAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCEST: gi|87010015|gb|CI277516.1|CI277516
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
EST: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATG ATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
genomic: CATGGCCGCCAACGACCTCCCGATCACCACCACCTCCCGCTACCACAATGgtgcgtagag ... caatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATC
agccgtgctgacgatgatccaacttgcttcctgtttggtcttgtgcaatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCAACAGCTTCTTTCACGGCGTGCGAGCTGCATGCTGATGCTCCAGGATCG
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgtagagtactaaccttcgtctccactgatcagaaccgtttcttgattcttatggcgagccgtgctgacgatgatccaacttgcttcctgtttggtcttgtgcaatctgcagATGATTAATCTCTTGAAGAAGCCAAGAAGTGATCAACACGCGGAAGAAATCAACAGCTTCTTTCACGGCGTGCGAGCTGCATGCTGATGCTCCAGGATCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT