1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacagGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTTATTCTTG
species | Oryza sativa |
transcript | LOC_Os02g53160.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGAGCAGAACGGCATCAAGCTTCACCAGTTCGGTATTGACGGCAGCAAG GAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTTEST: gi|88334616|gb|CI676398.1|CI676398
genomic: TGGAGCAGAACGGCATCAAGCTTCACCAGTTCGGTATTGACGGCAGCAAGgtaaatgaac ... gctgttacagGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTT
EST: TGGAGCAGAACGGCATCAAGCTTCACCAGTTCGGTATTGACGGCAGCAAG GAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTT
genomic: TGGAGCAGAACGGCATCAAGCTTCACCAGTTCGGTATTGACGGCAGCAAGgtaaatgaac ... gctgttacagGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTT
ttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacagGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTTATTCTTG
gcctgac putative branch site (score: 3)
ccttgct putative PPT
ttaaagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagtaattcagtatgcatccaactgaccattctcttcaatcctgttgactcttaaagttgatgcatagcctgacaataatctgaaccttgctgttacagGAGCTGCTTGTAAACATCCCTGAAGAAAAAATCCGAGAAGCACTCAAAGTTATTCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - tgcatcc
- - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaacc