1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aaaattcaaacataaaactgacgttctctaaataagtaatagatgaatgatgaccaaacactatcatatgttttagtttaattcttctttctttttctagGGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCGGAGAAGAAGCGGCATATGGAACAGCAAGAGTCAGAAACAAATATGCAAA
species | Oryza sativa |
transcript | LOC_Os02g53140.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGCGAAGACAGCATCACCGATAGACCAATTTCGATATGCACTGCAACAG GGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCGEST: gi|86826119|gb|CI310996.1|CI310996
genomic: TTGCGAAGACAGCATCACCGATAGACCAATTTCGATATGCACTGCAACAGgtcagtcact ... ctttttctagGGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCG
EST: TTGCGAAGACAGCATCACCGATAGACCAATTTCGATATGCACTGCAACAG GGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCG
genomic: TTGCGAAGACAGCATCACCGATAGACCAATTTCGATATGCACTGCAACAGgtcagtcact ... ctttttctagGGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCG
aatgatgaccaaacactatcatatgttttagtttaattcttctttctttttctagGGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCGGAGAAGAAGCGGCATATGGAACAGCAAGAGTCAGAAACAAATATGCAAA
gtttaat putative branch site (score: 30)
ttttagtttaattctt CT-rich tract
tatcatatgttttagt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaattcaaacataaaactgacgttctctaaataagtaatagatgaatgatgaccaaacactatcatatgttttagtttaattcttctttctttttctagGGAAACGATATGGCGGTTAAAGAACTAGATAGTCTTATGACTTTGATCGCGGAGAAGAAGCGGCATATGGAACAGCAAGAGTCAGAAACAAATATGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - -gaccaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catatgt