1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaggagtaggcttagccaaactgctgacggtccatatgaccatatttcactgatgtccagtttaattcactgcttctctaattgctgcaatctaattccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATCAGAACATGATATATCTCAAAGCAAG
species | Oryza sativa |
transcript | LOC_Os02g52920.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|66920229|gb|CX107077.1|CX107077
genomic: GGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|88206325|gb|CI206174.1|CI206174
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|11026623|gb|AU163224.1|AU163224
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: AATTGCAGCAAAGGATTGGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATNCATCCATEST: gi|163925933|gb|EG709657.1|EG709657
genomic: AATTGCAGCAAAGGATTGGG-ATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|2428877|gb|C73340.1|C73340
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|89184446|gb|CI047011.1|CI047011
genomic: GCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|218497308|gb|FG954388.1|FG954388
genomic: GATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGATATCGCTAAGAAGGACAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|87013522|gb|CI267223.1|CI267223
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTAATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|29682187|gb|CB678462.1|CB678462
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGCGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAAAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|88843865|gb|CI011123.1|CI011123
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATEST: gi|88982839|gb|CI028252.1|CI028252
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
EST: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAG GGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
genomic: GAATTGCAGCAAAGGATTGGGATGTTATCGCTAAGAAGGAAAAAATTGAGgtaggagtag ... ccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCAT
atgtccagtttaattcactgcttctctaattgctgcaatctaattccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATCAGAACATGATATATCTCAAAGCAAG
atctaat putative branch site (score: 18)
ttccttttgt CT-rich tract
agtttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggagtaggcttagccaaactgctgacggtccatatgaccatatttcactgatgtccagtttaattcactgcttctctaattgctgcaatctaattccttttgtagGGTGTAGAACTAGAGCTTAGAAAACTTGAAGTGGCAGTACAATCCATCCATCAGAACATGATATATCTCAAAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG