Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcggtgctctgctctctcgatcccctccgtcgtcgcaccattgccggcaaaatacatgcacaggtcgttgaattgcttgaatgcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCATGGCAAGGGCGTCCA

Basic information

species Oryza sativa
transcript LOC_Os02g52710.1
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g52710.1 (Oryza sativa), 3'ss of exon 2
lower sequence: GRMZM2G103055_T01 (Zea mays), 3'ss of exon 2
------------------------------------------------------------------------gtgcg-gtgctctgctctctcgatcccctccgt---cgtcgcaccattgccggcaaaatacatgcacaggtcgttgaattgcttgaatgc-ttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCATGGCAAGGGCGTCCA
                                                                        ||  | ||||| || |   ||  |  | | |||    ||| |    |  || |         | |||   || |||   || |||  |||  |   |||||||| |||| ||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||  |
gtgtttgctttaatttctcctctactagtactacacgtctacactgtaactcccaccagaccacaccactgcgtctgcgtgct-tgatgcttcattatcttgcgtgtgtgtcactggctaacctgtggggctacttcacgtctccttggtgtggttgcgtgcactgcacagGCTACCTGCCGGGGCGCCTGTACGACCTTGACGCGTCCAAGTACGGCAACGAGGCGCAGCTCAAGTCCCTGATCGAGGCGTTCCACAGCAAGGGCGTGAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88354439|gb|CI624829.1|CI624829
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86888494|gb|CI303776.1|CI303776
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAA
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAA
EST: gi|88348911|gb|CI653955.1|CI653955
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|33795763|gb|CF323751.1|CF323751
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88399541|gb|CI606162.1|CI606162
EST:     ATCACCCACGCTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: ATCACCCACG-TCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88344976|gb|CI625822.1|CI625822
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86850713|gb|CI309525.1|CI309525
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86850267|gb|CI305506.1|CI305506
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88825524|gb|CI776089.1|CI776089
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88288516|gb|CI661721.1|CI661721
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88576316|gb|CI670461.1|CI670461
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88354042|gb|CI636240.1|CI636240
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88344978|gb|CI625824.1|CI625824
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88310938|gb|CI659541.1|CI659541
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88737277|gb|CI760785.1|CI760785
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|66913107|gb|CX099955.1|CX099955
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88346913|gb|CI628583.1|CI628583
EST:     CATTACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88354448|gb|CI624838.1|CI624838
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88290571|gb|CI666944.1|CI666944
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86850993|gb|CI311211.1|CI311211
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88825879|gb|CI776444.1|CI776444
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86903847|gb|CI302493.1|CI302493
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88572888|gb|CI664459.1|CI664459
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88574544|gb|CI666313.1|CI666313
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGCCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGNTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88392507|gb|CI625329.1|CI625329
EST:     AATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86894558|gb|CI308279.1|CI308279
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88351892|gb|CI624697.1|CI624697
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88340759|gb|CI636919.1|CI636919
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88761316|gb|CI770872.1|CI770872
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86900826|gb|CI304031.1|CI304031
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88302791|gb|CI668637.1|CI668637
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|33793797|gb|CF322783.1|CF322783
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88392660|gb|CI625482.1|CI625482
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88317022|gb|CI625659.1|CI625659
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88392512|gb|CI625334.1|CI625334
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGGGAGCAAG                         GCTACATGCCTGGGCGGGTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|58608783|gb|CK036816.1|CK036816
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88306480|gb|CI638270.1|CI638270
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88360656|gb|CI647666.1|CI647666
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88296331|gb|CI669107.1|CI669107
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88575858|gb|CI670003.1|CI670003
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|87008878|gb|CI304821.1|CI304821
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88352053|gb|CI626053.1|CI626053
EST:     CATCACCCAAGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCCTACATGCCTGGGCGGCTGTAAGATCTGGACGCGTATAAGTACGGCAAC
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGC-TACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAAC
EST: gi|33795432|gb|CF323586.1|CF323586
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88360799|gb|CI647809.1|CI647809
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88345034|gb|CI625880.1|CI625880
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88337748|gb|CI632250.1|CI632250
EST:     CATTACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88331107|gb|CI639518.1|CI639518
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88573078|gb|CI664649.1|CI664649
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGNTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|88309669|gb|CI656410.1|CI656410
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|33795738|gb|CF323738.1|CF323738
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|33692900|gb|CF321139.1|CF321139
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86909396|gb|CI304651.1|CI304651
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTA
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTA
EST: gi|88363477|gb|CI618038.1|CI618038
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTAAATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86902519|gb|CI304338.1|CI304338
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
EST: gi|86904074|gb|CI304508.1|CI304508
EST:     CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAG                         GCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG
genomic: CATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 53 (upstream exon), 36 (downstream exon)
Score: 9

GGGTGGTACAACTTCCTGATGGGCAAGGTGGACGACATCGCCGCAGCCGGCATCACCCACGTCTGGCTCCCTCCGCCGTCTCACTCTGTCGGCGAGCAAGgtgcggtgct ... gcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCATGGCAAGGGCGTCCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccattgccggcaaaatacatgcacaggtcgttgaattgcttgaatgcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCATGGCAAGGGCGTCCA
                                            tgcttct  CT-rich tract
           aaaatacat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgcggtgctctgctctctcgatcccctccgtcgtcgcaccattgccggcaaaatacatgcacaggtcgttgaattgcttgaatgcttctgcagGCTACATGCCTGGGCGGCTGTACGATCTGGACGCGTCTAAGTACGGCAACGAGGCGCAGCTCAAGTCGCTGATCGAGGCGTTCCATGGCAAGGGCGTCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT