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gtgtgcctctatgtccttcacattttcaatgtagtttgtcctgatgttttgagacaatccaggtgcaatgatttagctctagtagcttaagattaacaagcaggaatttttatatttttgtgacagtagggatactgtgaaatgcgaaaccatttttgtttggcagctgtaggtagtgcttacacattttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTATTGTTGACAATAATTTGTTTAAACCTGGTGATCGTGTGGCCATTGGAG
species | Oryza sativa |
transcript | LOC_Os02g52470.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAG ATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTEST: gi|88727869|gb|CI749381.1|CI749381
genomic: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAGgtgtgcctct ... tttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACT
EST: CTGCGGCGAGCGGAAGGGCCGCC-TCAAGCGTCCCAAAACCTTAGAGCAG ATATGTAGGGAATGCEST: gi|33676371|gb|CF304610.1|CF304610
genomic: CTGCGGCGAGCGGAAGG-CCGCCCTCAAGCGTCCCAAAACCTTAGAGCAGgtgtgcctct ... tttcttctagATATGTAGGGAATGC
EST: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAG ATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTEST: gi|88826126|gb|CI776691.1|CI776691
genomic: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAGgtgtgcctct ... tttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACT
EST: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAG ATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATC
genomic: GCTGCGGCGAGCGGAAGGCCGCCCTCAAGCGTCCCAAAACCTTAGAGCAGgtgtgcctct ... tttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATC
tgcgaaaccatttttgtttggcagctgtaggtagtgcttacacattttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTATTGTTGACAATAATTTGTTTAAACCTGGTGATCGTGTGGCCATTGGAG
tgcttac putative branch site (score: 9)
cattttcttct CT-rich tract
atttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgcctctatgtccttcacattttcaatgtagtttgtcctgatgttttgagacaatccaggtgcaatgatttagctctagtagcttaagattaacaagcaggaatttttatatttttgtgacagtagggatactgtgaaatgcgaaaccatttttgtttggcagctgtaggtagtgcttacacattttcttctagATATGTAGGGAATGCTTCTATGTTGTCTTTGAGGATGAGATCCATCAGACTATTGTTGACAATAATTTGTTTAAACCTGGTGATCGTGTGGCCATTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG