1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tagaataatctgtattgagttattttggaaacactgggcaccaggacccaacataaatgctggtgaacagaaagttaattatttcattgtaatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATAT
species | Oryza sativa |
transcript | LOC_Os02g52420.3 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88401127|gb|CI685112.1|CI685112
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88368945|gb|CI675673.1|CI675673
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|29657569|gb|CB653844.1|CB653844
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88453699|gb|CI683955.1|CI683955
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88730684|gb|CI754297.1|CI754297
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGAAGCCTACGGCCTGCGAAEST: gi|88501800|gb|CI695558.1|CI695558
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88664392|gb|CI688470.1|CI688470
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAEST: gi|88664755|gb|CI702439.1|CI702439
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
EST: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAG AGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
genomic: TATCAGGCGACGAGAACGCTCTGCAACCTGGTGGATATCCTCTTCAACAGgtgagccaag ... aatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAA
acccaacataaatgctggtgaacagaaagttaattatttcattgtaatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATAT
agttaat putative branch site (score: 4)
aaagttaattatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagaataatctgtattgagttattttggaaacactgggcaccaggacccaacataaatgctggtgaacagaaagttaattatttcattgtaatcttgcagAGGTCAGAGTGACAAACCGGAAGATAACCCTAGACGCCTACGGCCTGGGAAAGTATCTCCTCGTCTAAGCGTTCCCAAACATATACAGCGGCCACCATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC