1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...caaaactaatacaacaatatttctgtcattttgtgattagcctcatattcttttcaatgctgttgtttttttatctgatgaacatgtgttgtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGGATTTATTATGTCAAGAGTTGCAAGGCAACCAGAACTACTGTGAAACAT
species | Oryza sativa |
transcript | LOC_Os02g49800.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|29658892|gb|CB655167.1|CB655167
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|29666293|gb|CB662568.1|CB662568
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|29633918|gb|CB638927.1|CB638927
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|27576738|gb|CA999432.1|CA999432
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|86835611|gb|CI348068.1|CI348068
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: ATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|29642625|gb|CB647632.1|CB647632
genomic: ATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCATTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|157650384|gb|EX450018.1|EX450018
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|86903772|gb|CI302418.1|CI302418
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGEST: gi|29664921|gb|CB661196.1|CB661196
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
EST: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAA GGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
genomic: GCGATTTGACATGGATCCAGTGTGATGCACCATGCACAAACTGTGCCAAAgtatgcaact ... gtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAG
tattcttttcaatgctgttgtttttttatctgatgaacatgtgttgtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGGATTTATTATGTCAAGAGTTGCAAGGCAACCAGAACTACTGTGAAACAT
atctgat putative branch site (score: 115)
tgttgtttttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaaactaatacaacaatatttctgtcattttgtgattagcctcatattcttttcaatgctgttgtttttttatctgatgaacatgtgttgtactcgcagGGACCTCATCCTTTATATAAGCCGGCAAAAGAAAAGATAGTCCCTCCCAAGGATTTATTATGTCAAGAGTTGCAAGGCAACCAGAACTACTGTGAAACAT
- aaactaa
- - - - - -caacaat
- - - - - - - - - - - - - - - ttgtgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtgt