1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaccttgcaatgtttcactcagaatatatttttttctgttcagtcttttccttgcttatgcttgaattattctgtgctctgaatgatttcttgttccaaatttgtcttattggatgcctattgtcctcttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
species | Oryza sativa |
transcript | LOC_Os02g47600.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|33823829|gb|CF337721.1|CF337721
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|58689221|gb|CK077908.1|CK077908
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: AAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|58600675|gb|CK011203.1|CK011203
genomic: AAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|163919836|gb|EG714898.1|EG714898
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|27576275|gb|CA998969.1|CA998969
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|88308785|gb|CI653672.1|CI653672
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGTEST: gi|58688425|gb|CK077112.1|CK077112
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|58667772|gb|CK056458.1|CK056458
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|58586822|gb|CF985130.1|CF985130
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|58676589|gb|CK065276.1|CK065276
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGCEST: gi|163929548|gb|EG709315.1|EG709315
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
EST: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAG GTCCAGGAGCTCCAGCAGTTTTCAACTGT
genomic: CATGTCTCAAAAACATGTTGCTGCTCATCCATGGCACGATCTGGAGATAGgtaccttgca ... ttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
tgatttcttgttccaaatttgtcttattggatgcctattgtcctcttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
cctattgtcctctt CT-rich tract
aaatttgtcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttgcaatgtttcactcagaatatatttttttctgttcagtcttttccttgcttatgcttgaattattctgtgctctgaatgatttcttgttccaaatttgtcttattggatgcctattgtcctcttaaatgcagGTCCAGGAGCTCCAGCAGTTTTCAACTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT