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...tggttctactaccagtagagagcattgtaaaacacctctaaagttaaactatgaacagcatcagattggactgcactcatctttttattgttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAATGCTGGGATGGAGAAACTAACAGCTATGTTGCAGTAAAGGTTATAAAA
species | Oryza sativa |
transcript | LOC_Os02g47410.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGAC-GGAG GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAEST: gi|38470825|gb|CF954956.1|CF954956
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAEST: gi|58659441|gb|CK048121.1|CK048121
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAEST: gi|58666776|gb|CK055462.1|CK055462
genomic: CTCATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
EST: ATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAG GTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
genomic: ATCTTGTATGTCAACTTGGAATTGGTTAATAAAAAGTCGGACCGGAGgttagttttc ... ttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAA
aaactatgaacagcatcagattggactgcactcatctttttattgttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAATGCTGGGATGGAGAAACTAACAGCTATGTTGCAGTAAAGGTTATAAAA
tctttttattgttct CT-rich tract
tttttattgttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggttctactaccagtagagagcattgtaaaacacctctaaagttaaactatgaacagcatcagattggactgcactcatctttttattgttctaagtagGTACGTTATTAAAGAAATGCTTGGCCAAGGTACGTTTGGACAGGTTGCTAAATGCTGGGATGGAGAAACTAACAGCTATGTTGCAGTAAAGGTTATAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
tggttct
- - - - - - - - - - - - - - -aaacacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgca